Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34190 345 / 4e-112 NAC ANAC017 NAC domain containing protein 17 (.1) AT1G34180 338 / 4e-109 NAC ANAC016 NAC domain containing protein 16 (.1.2) AT1G32870 227 / 3e-67 NAC ANAC13, ANAC013 Arabidopsis NAC domain containing protein 13, NAC domain protein 13 (.1.2) AT5G09330 203 / 9e-59 NAC VNI1, ANAC082 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) AT5G04410 199 / 2e-56 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT3G10490 189 / 2e-56 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT1G65910 196 / 6e-55 NAC ANAC028 NAC domain containing protein 28 (.1) AT5G64060 188 / 2e-54 NAC ANAC103 NAC domain containing protein 103 (.1) AT3G10500 187 / 4e-52 NAC ANAC053 NAC domain containing protein 53 (.1) AT3G10480 183 / 1e-51 NAC ANAC050 NAC domain containing protein 50 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006054 [exp] 907 / 0 AT1G34190 339 / 9e-110 NAC domain containing protein 17 (.1) Lus10037939 [exp] 185 / 1e-52 AT3G10490 415 / 2e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10028824 [exp] 187 / 2e-52 AT5G04410 378 / 5e-125 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10023537 [exp] 184 / 2e-52 AT3G10490 331 / 2e-110 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10007377 [exp] 185 / 2e-50 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10020794 [exp] 186 / 4e-50 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10042284 [exp] 175 / 4e-50 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 174 / 8e-50 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10038670 [exp] 185 / 2e-49 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G200100 [exp] 501 / 1e-172 AT1G34190 447 / 2e-151 NAC domain containing protein 17 (.1) Potri.002G061300 [exp] 485 / 6e-166 AT1G34190 432 / 3e-145 NAC domain containing protein 17 (.1) Potri.010G229900 [exp] 204 / 1e-58 AT5G04410 481 / 4e-165 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.008G031800 [exp] 203 / 5e-58 AT5G04410 511 / 6e-177 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.017G139500 [exp] 191 / 8e-53 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.004G081000 [exp] 189 / 3e-52 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1) Potri.005G058900 [exp] 179 / 1e-50 AT5G64060 256 / 3e-82 NAC domain containing protein 103 (.1) Potri.015G030200 [exp] 174 / 1e-50 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.010G229700 [exp] 177 / 1e-49 AT3G10480 418 / 8e-144 NAC domain containing protein 50 (.1.2.3) Potri.007G109100 [exp] 176 / 4e-49 AT5G09330 265 / 6e-84 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10028713 pacid=23164571 polypeptide=Lus10028713 locus=Lus10028713.g ID=Lus10028713.BGIv1.0 annot-version=v1.0 ATGCTGGATACGGCGGTATCGGAGCTCGCCGGCGGAGGAGGAGGAGGAGGAATTAGCGCTGGAGAATTCAAGTGGCCGCCTGGGTTCAGGTTCCATCCGA CGGATGAGGAGCTGGTACTGTATTACTTGAAGAGGAAGATCTGTAGGAGGAGGCTGAGGCTCAATGTCATCCGTGAGCTGGATGTTTACAAGTGGGATCC TGAGGATTTGCCTGGGCTAGCACTGTTAAAAACTGGCGATAGGCAGTGGTTCTTCTTCAGTGCGAGGGGCCACAAGTATCCTAACGGAGGACGAGCGAGC AGGGCAACATCACAGGGTTACTGGAAAGCTACTGGAAAAGACCGCAACATCACGTGCAACTCGAGGAGCGTTGGGGTGAAGAAGACCCTAGTTTTCTATC GAGGCCGTGCTCCTACGGGTGAAAGGACCGACTGGGTAATGCACGAGTACACTTTGGATGAGGAGGAACTCAAAAGATGCCCTAATGTCCAGGATTACTA TGCACTTTACAAAGTATTCAAGAAGAGCGGACCTGGCCCTAAAAATGGCGAGCAATATGGAGCACCGTTCCGAGAGGAAGACTGGCTAGACGACGAGACC GCTATCGTTAGTGTCCCAGAAATTACTGTCAGGAAGATAAATGAGTTGCCTCCTGTTTGCAATGAGAAAGCGGTTCCTCGAGTTGAGCCACCGCGTGACG ATCTGTTTGACATGATTAAGGAGATTGTCGAAGAACCTAGACTTGAACCGTTGAATGTGACTGAGTTTTGTCCAATAGTCCAGGTTGGTGGTAAAGAAGT TACAGAGAGCACGATGGTTAATTCGTCGACAAGAGATTTCACCATTCCAGAAGCTGGATATAACTTCGGGAATTCGGAAATTTCCGAGCTTCACTCATCT GAGGCGCCTGAAGTCAACTCTGCTATTAAGTGGACTGAAGATGATTTTCTGGAAGTGAATGATCTATTTAGCTCTGAACCTACCGTGATGAACGCTGAGC AATCCTCTCCGACTGTTGATTCCTTGTTTGATGGCATTGACGGACTGTCTCAGTTCGAGCTATATCATGATGCGGCTATGTTTTTGCGGGACATGGGCCC TCTCGGCCAGGAAACGATTTCACAATCCTTCGGAGACAACGTGGTCGATCATATCAGTCATCATCAGTATCAGCAATCTGCAGTAAATGAGGATAACAAT GAAACAAAACTGCATCAGGAGGGAGACCAGTTCGATTACTCGTCTTGGCAACCGGATCAATCTACACTTAATGAATTACAGCACTTGCTAAACGATCCGC AAGGGAGTGTGCTGACAAACGATGCTGCTCCTTCTAATCTTGGACCTCAAACTTCAGGTGCGGTCTGTGATAATGTCGCCAATGAAAACCAAGCTGCAAG TACTACTGCCGAAGATGGTACCTCTGGTTGGTTCTCTTCTGCGATGTGGAACTTTGTCGATTCAATCCCATTCGAACCGGCATTAGCTGCTGAGAGCCCA CTAGTGAACAAAGCTATGGGCCGGATGACGAGCTTCCGCAGGCTGAGGATGAACCTTGTAGACGCCAACTGCGTACCGGTCGCTCGTCCCGATATTGGCG CTGCGAATGCGAGAAGGGCAGGTGGAAAGAAAGGCGGTCTGATGTTGATGCTATCAGTCGTGGCAGTCTCACTTGCCGTTCTGTGGGTTTCGATCGGGTA G
AA sequence Show only first row Show all	>Lus10028713 pacid=23164571 polypeptide=Lus10028713 locus=Lus10028713.g ID=Lus10028713.BGIv1.0 annot-version=v1.0 MLDTAVSELAGGGGGGGISAGEFKWPPGFRFHPTDEELVLYYLKRKICRRRLRLNVIRELDVYKWDPEDLPGLALLKTGDRQWFFFSARGHKYPNGGRAS RATSQGYWKATGKDRNITCNSRSVGVKKTLVFYRGRAPTGERTDWVMHEYTLDEEELKRCPNVQDYYALYKVFKKSGPGPKNGEQYGAPFREEDWLDDET AIVSVPEITVRKINELPPVCNEKAVPRVEPPRDDLFDMIKEIVEEPRLEPLNVTEFCPIVQVGGKEVTESTMVNSSTRDFTIPEAGYNFGNSEISELHSS EAPEVNSAIKWTEDDFLEVNDLFSSEPTVMNAEQSSPTVDSLFDGIDGLSQFELYHDAAMFLRDMGPLGQETISQSFGDNVVDHISHHQYQQSAVNEDNN ETKLHQEGDQFDYSSWQPDQSTLNELQHLLNDPQGSVLTNDAAPSNLGPQTSGAVCDNVANENQAASTTAEDGTSGWFSSAMWNFVDSIPFEPALAAESP LVNKAMGRMTSFRRLRMNLVDANCVPVARPDIGAANARRAGGKKGGLMLMLSVVAVSLAVLWVSIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10028713 [exp]	0	1
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Lus10006054 [exp]	1.0	0.9325
AT2G02870			Galactose oxidase/kelch repeat...		Lus10030489 [exp]	4.0	0.8600
AT1G21380			Target of Myb protein 1 (.1)		Lus10028649 [exp]	4.6	0.8442
AT2G01410			NHL domain-containing protein ...		Lus10031811 [exp]	4.9	0.8320
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10003308 [exp]	7.1	0.8255
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10026695 [exp]	7.4	0.8129
AT5G16370		AAE5	acyl activating enzyme 5 (.1)		Lus10039161 [exp]	8.5	0.8101
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10022137 [exp]	10.9	0.8217
AT3G29270			RING/U-box superfamily protein...		Lus10030699 [exp]	11.4	0.8179
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Lus10018367 [exp]	11.6	0.8084

Compare expression of checked genes

Lus10028713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.