Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71800 308 / 2e-100 CSTF64 cleavage stimulating factor 64 (.1) AT1G60000 70 / 2e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G13850 65 / 2e-12 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT5G61030 68 / 3e-12 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT1G73840 67 / 7e-12 ESP1 ENHANCED SILENCING PHENOTYPE 1, hydroxyproline-rich glycoprotein family protein (.1) AT4G00830 67 / 7e-12 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G39260 60 / 3e-11 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT4G24770 64 / 5e-11 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT1G60900 65 / 6e-11 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) AT2G37220 62 / 1e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006055 [exp] 689 / 0 AT1G71800 288 / 3e-92 cleavage stimulating factor 64 (.1) Lus10014814 [exp] 480 / 2e-167 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1) Lus10017923 [exp] 442 / 4e-151 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1) Lus10017852 [exp] 70 / 2e-13 AT5G61030 178 / 7e-55 glycine-rich RNA-binding protein 3 (.1) Lus10016639 [exp] 68 / 2e-13 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10022551 [exp] 67 / 4e-13 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10034685 [exp] 69 / 6e-13 AT5G61030 177 / 7e-54 glycine-rich RNA-binding protein 3 (.1) Lus10043158 [exp] 66 / 7e-13 AT4G13850 154 / 1e-48 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10032591 [exp] 66 / 1e-12 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G061200 [exp] 374 / 3e-125 AT1G71800 354 / 3e-117 cleavage stimulating factor 64 (.1) Potri.008G172100 [exp] 71 / 1e-13 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G065600 [exp] 70 / 3e-13 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.012G056200 [exp] 71 / 5e-13 AT1G73840 224 / 2e-69 ENHANCED SILENCING PHENOTYPE 1, hydroxyproline-rich glycoprotein family protein (.1) Potri.012G061600 [exp] 68 / 9e-13 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.001G319900 [exp] 65 / 3e-12 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.015G057400 [exp] 65 / 8e-12 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.011G050400 [exp] 67 / 9e-12 AT1G60900 532 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.002G178200 [exp] 66 / 2e-11 AT4G00830 558 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.004G040900 [exp] 66 / 2e-11 AT1G60900 541 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10028714 pacid=23164611 polypeptide=Lus10028714 locus=Lus10028714.g ID=Lus10028714.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCTTCCCAGCATCGCTGCGTTTTCGTTGGGAACATACCGTATGATGCAACTGAAGAGCAGCTCATAGAAATCTGCAGAGAAGTTGGCCCCG TTGTGTCTTTCAGATTAGTTATTGACAGAGAAACTGGGAAGCCAAAGGGTTACGGATTTTGTGAATATAAGGATGAAGAGACAGCTCTAAGTGCTCGTCG TAACCTCCAGGGTTATGAGATCAACGGCAGGCAATTACGAGTAGATTTTGCAGAAAATGACAAGAACAATGATAGAAACAAGGAACAGGGAAAGCAGGCT TCTAATGCTGATGCTAGAAGACACGGAGCGGCCCCTGTAATCCCTGCGGACTCTACTCAAAATCAGCCGATAGGTCTGCATATAGCCATGACTGCGGCCA CTGTCATGACCGGAGCTTTAGGTGCTACTCAGGCTGCTTTGCCGGGTCACGCAGCACTACCGAGTGACCCTTTGACCCTTCATTTGGCAAAGATGTCTAG GAATCAATTGAATGAAGTCATCTCTGAGTTAAAGGTAATGGCCACACAAAACAGGGAAGCAGCACGGCAACTGTTAGTCACAAGGCCTCAACTGCCCAAA GCCCTTTTCCAGGCGCAAATAATGCTAGGAATGGTTACCCCGGAAGTGCTTCAAATGCCAAATATAAGAGCACCAACAAGCCAACAGGCATTACTTCCAT CACAAGATACGCATCAGAGTAAACAATCCCTTCGAATGTTGACCGGATCAGCTCCTTCGCAGAGAACATATGGAGGTCCGATGAGCCAAATACCAGGCAG TCACTCGTCTTTATTGCCACTTAAATCCGGAGTCCGAGATCAGGTCCCCACATCCTCACTGCATAATATGACCGCTGTTCCTCTACAAGCACCGTTACCT GGAAAACCGGTAGCTCCGCTACTTCCTCCTGTCCATCCTGTTAGACCGCCGAATCAGACGGCTGATTTGCCGTTCTTACACCAGCAAGTTCAACGATCAT CTGTACATCACTCAGGACAGGATCCTAGGGAGCCAAGTAGTCGTCCTACAAAACTTCGGAGGTTGGACGAAGGTAGGAGCACATCTTCCTCAAACCGGGA CCATAACATTCCCAACAATACCGGATTCAGTTCCGGCCAAATGGCACCGGTTAATAGTTCAGCGCCTGCGAAACTACTTCCCAGACCGGAAGTGAAACAA GCGCCTCAGGTATATCTCCGTAACTACTTATGTGGAACAAATCCAACAGAATATGTCTGGTTCCAGCCGGATTTGGGGGCTCCGCCTAATTCCAGCCTCC GAATTCCGTTCGGAGTCGGTTTCGGAGTCGTCCGGATTTGCACTTGA
AA sequence Show only first row Show all	>Lus10028714 pacid=23164611 polypeptide=Lus10028714 locus=Lus10028714.g ID=Lus10028714.BGIv1.0 annot-version=v1.0 MASSSQHRCVFVGNIPYDATEEQLIEICREVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKNNDRNKEQGKQA SNADARRHGAAPVIPADSTQNQPIGLHIAMTAATVMTGALGATQAALPGHAALPSDPLTLHLAKMSRNQLNEVISELKVMATQNREAARQLLVTRPQLPK ALFQAQIMLGMVTPEVLQMPNIRAPTSQQALLPSQDTHQSKQSLRMLTGSAPSQRTYGGPMSQIPGSHSSLLPLKSGVRDQVPTSSLHNMTAVPLQAPLP GKPVAPLLPPVHPVRPPNQTADLPFLHQQVQRSSVHHSGQDPREPSSRPTKLRRLDEGRSTSSSNRDHNIPNNTGFSSGQMAPVNSSAPAKLLPRPEVKQ APQVYLRNYLCGTNPTEYVWFQPDLGAPPNSSLRIPFGVGFGVVRICT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10028714 [exp]	0	1
AT1G04830			Ypt/Rab-GAP domain of gyp1p su...		Lus10017104 [exp]	5.7	0.6751
AT2G22720			SPT2 chromatin protein (.1.2.3...		Lus10019243 [exp]	13.6	0.6371
AT1G21610			wound-responsive family protei...		Lus10000853 [exp]	32.1	0.6387
AT5G59830			unknown protein		Lus10005889 [exp]	53.4	0.6026
					Lus10032730 [exp]	60.0	0.5840
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033817 [exp]	65.0	0.6127
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10000743 [exp]	144.3	0.5466
AT2G47010			unknown protein		Lus10009978 [exp]	149.7	0.5358
AT1G03350			BSD domain-containing protein ...		Lus10034015 [exp]	218.6	0.5071

Compare expression of checked genes

Lus10028714 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.