Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34210 650 / 0 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT1G71830 645 / 0 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT4G33430 497 / 2e-170 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 483 / 7e-165 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT2G13800 462 / 5e-157 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT1G60800 427 / 6e-143 NIK3 NSP-interacting kinase 3 (.1) AT5G16000 412 / 4e-137 NIK1 NSP-interacting kinase 1 (.1) AT5G65240 408 / 5e-136 Leucine-rich repeat protein kinase family protein (.1.2) AT5G10290 399 / 3e-132 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G25560 392 / 2e-129 NIK2 NSP-interacting kinase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006056 [exp] 833 / 0 AT1G71830 731 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10006057 [exp] 654 / 0 AT1G71830 954 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10028716 [exp] 624 / 0 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10020962 [exp] 496 / 4e-170 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10019145 [exp] 429 / 6e-144 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1) Lus10034350 [exp] 428 / 2e-143 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10005103 [exp] 426 / 3e-142 AT5G16000 998 / 0.0 NSP-interacting kinase 1 (.1) Lus10034413 [exp] 422 / 3e-141 AT5G16000 937 / 0.0 NSP-interacting kinase 1 (.1) Lus10023146 [exp] 402 / 4e-136 AT5G10290 680 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G087700 [exp] 660 / 0 AT1G34210 1012 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.013G117200 [exp] 660 / 0 AT1G34210 1013 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.005G083300 [exp] 647 / 0 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.007G082400 [exp] 644 / 0 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.001G206700 [exp] 499 / 2e-171 AT4G33430 927 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.003G023000 [exp] 496 / 2e-170 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.008G110300 [exp] 438 / 2e-147 AT3G25560 918 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.010G043200 [exp] 435 / 3e-146 AT1G60800 925 / 0.0 NSP-interacting kinase 3 (.1) Potri.017G108000 [exp] 435 / 4e-146 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1) Potri.008G188800 [exp] 431 / 1e-144 AT1G60800 930 / 0.0 NSP-interacting kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10028715 pacid=23164545 polypeptide=Lus10028715 locus=Lus10028715.g ID=Lus10028715.BGIv1.0 annot-version=v1.0 ATGAACCTCTTTGCCAATCCGTTTAGGGAACTTGGGAATGATGGTTTGTCTGGTCAGCTTGTTCCTGACCTTCACCTGCTAAAGAATTTGGAATACTTGT CTCTGTACAATAACAGCATAAGTGGTCCAATTCCAAGTGAGCTTGGGAATCTGACCAACTTGATAAGTTTGGATCTTTATTTCAACCGGTTCACTGGATC GATACCGGAATCTTTCGCGAAGCTGTCAAAGCTGAGATTCCTGAGGCTTAATAACAACAACTTGACCGGTTCGATTCCTCCGTCGTTGACTAACATTTCG ACATTACAAGTGCTGGATCTCTCAAACAACAGTCTTTCCAGTTTGGTTCCGGATTACGGTTCCTTCTCAACATTCACTACCCTAAGTTTTGATAACAACT TGGATCTCTGCGGACCGGTAATTGAGCACCCTTGTCCCGGCTCTCCTCCGTTTCCTCCTCCATCAATTCCACAGTCACCAAGTTCGTCACGAGGAAGGAG ACTTGCTACCGGAGCAATAGCTGGTGGAGTTGCAGCTGGTGCAGCTTTGTTGTTTGCTTCCCTAGCAATAGCATTTGCTTTGTGGATTCGAAGGAAACGT ACACCCGAAGTTTTCTTCGATGTACTTGCGGAAGAGGATCCGGAAGTTCATATGGGGCAGCTTAAGAGGTTTTCGTTGCATGAGTTACAGGTGGCTACCG ATACCTTCAGCAGCAAGAACATTCTAGGCAAAGGAGCGTTCGGCAATGTCTACAAAGGTCGTCTGTCAGATGGATCGTTGGTGGCGGTGAAACGACTGAA AGAGGAGCGTACACCTGGCGGAGAGCTGCAGTTTCAAACCGAGGTCGAGATGCTCAGCATGGCGATCCATCGGAATCTCCTAAGGTTACGTGGCTTTTGC ATGACTCCAACCGAAAGATTGCTCGTGTATCCCTTCATGCCAAATGGATGTGTTGCATCATGCTTGAGAGAACGTCCACCGTTGCTACCTCCACTTGACT GGCCAACTCGGAGGCGAATTGCATTGGGATCCGCAAGGGGATTGTCTTATTTGCATCATCATTGTAACCCGAAGATCATTCATCACGATGTAAAAGCTGC AAACATCTTGCTAGACGACAAATTCGAGGCTGTTGTTGGAGATTTTGGGTTAGCTACCTTGATGGACAACAAGGCTACTCATGTCACTGCTAATGTCTTT GGTACAATGGGCTACATTGCACCTGAATATCTCTCAACCGGAAGATCTTCCGAGAAGATTGATGTTTTCGCGTACGGGATCATGCTCCTCGAGCTAATTA CAGGCCAGAAACCGTTTGATCTTGCTCGCCTTGCAAGTGAAAACAACGACCTGTTACTTGATTGGGTGACCGAGCTTCTGAAGGAGAAGAAGCTGGAGAT GGTGGTGGACCCCGCTCTGGGGAACAAGTTCGTCAAGGCTGAAGTGGAACAGTTGATCCAGGTAGCTCTTGTTTGCACACAAGTTTCTCCGGTGGGCCGG CCAAGGATGTCTGAAGTGGTAAGGATGCTAGAAGGTGATGGTGATGTTCTGACTGAGAGATGGGATGAATGGGAAACTTCGGAAGCGCTCAGGGAAAAGA TGAGCATGGGGCCCCCTCCTTCTCCTTCTCCTAATTCGCCTTTGATATTGGATTCGACAGAGAACCAGCAGGCACTCGAACTGTCTGCTGCACGGTGA
AA sequence Show only first row Show all	>Lus10028715 pacid=23164545 polypeptide=Lus10028715 locus=Lus10028715.g ID=Lus10028715.BGIv1.0 annot-version=v1.0 MNLFANPFRELGNDGLSGQLVPDLHLLKNLEYLSLYNNSISGPIPSELGNLTNLISLDLYFNRFTGSIPESFAKLSKLRFLRLNNNNLTGSIPPSLTNIS TLQVLDLSNNSLSSLVPDYGSFSTFTTLSFDNNLDLCGPVIEHPCPGSPPFPPPSIPQSPSSSRGRRLATGAIAGGVAAGAALLFASLAIAFALWIRRKR TPEVFFDVLAEEDPEVHMGQLKRFSLHELQVATDTFSSKNILGKGAFGNVYKGRLSDGSLVAVKRLKEERTPGGELQFQTEVEMLSMAIHRNLLRLRGFC MTPTERLLVYPFMPNGCVASCLRERPPLLPPLDWPTRRRIALGSARGLSYLHHHCNPKIIHHDVKAANILLDDKFEAVVGDFGLATLMDNKATHVTANVF GTMGYIAPEYLSTGRSSEKIDVFAYGIMLLELITGQKPFDLARLASENNDLLLDWVTELLKEKKLEMVVDPALGNKFVKAEVEQLIQVALVCTQVSPVGR PRMSEVVRMLEGDGDVLTERWDEWETSEALREKMSMGPPPSPSPNSPLILDSTENQQALELSAAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028715 [exp]	0	1
AT5G04250			Cysteine proteinases superfami...		Lus10037977 [exp]	2.2	0.9075
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10032724 [exp]	2.4	0.9068
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031891 [exp]	4.5	0.9004
AT4G12010			Disease resistance protein (TI...		Lus10012246 [exp]	5.9	0.8915
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10022407 [exp]	6.7	0.8509
AT1G19270		DA1	DA1 (.1)		Lus10018789 [exp]	6.9	0.8890
AT3G55740		ATPROT2, ProT2	proline transporter 2 (.1.2)		Lus10028251 [exp]	8.1	0.8427
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Lus10003329 [exp]	10.5	0.8460
AT1G67300			Major facilitator superfamily ...		Lus10034930 [exp]	10.6	0.8709
AT3G56770	bHLH	bHLH107	basic helix-loop-helix (bHLH) ...		Lus10038306 [exp]	13.7	0.8881

Compare expression of checked genes

Lus10028715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.