Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71830 949 / 0 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT1G34210 949 / 0 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT2G13800 717 / 0 BAK8, ATSERK5 BRI1- ASSOCIATED KINASE 8, SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5, somatic embryogenesis receptor-like kinase 5 (.1) AT4G33430 644 / 0 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT2G13790 602 / 0 BAK7, BKK1, ATSERK4 BAK1-LIKE 1, BRI1- ASSOCIATED KINASE 7, somatic embryogenesis receptor-like kinase 4 (.1) AT1G60800 537 / 0 NIK3 NSP-interacting kinase 3 (.1) AT3G25560 536 / 0 NIK2 NSP-interacting kinase 2 (.1.2.3) AT5G16000 530 / 0 NIK1 NSP-interacting kinase 1 (.1) AT5G63710 511 / 1e-175 Leucine-rich repeat protein kinase family protein (.1) AT2G23950 484 / 1e-164 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006057 [exp] 919 / 0 AT1G71830 954 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10006056 [exp] 669 / 0 AT1G71830 731 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10020962 [exp] 650 / 0 AT4G33430 989 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Lus10028715 [exp] 648 / 0 AT1G71830 748 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10000629 [exp] 558 / 0 AT5G10290 914 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10030898 [exp] 546 / 0 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10030591 [exp] 545 / 0 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10034350 [exp] 541 / 0 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10023146 [exp] 489 / 1e-169 AT5G10290 680 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G087700 [exp] 974 / 0 AT1G34210 1012 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.013G117200 [exp] 972 / 0 AT1G34210 1013 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.005G083300 [exp] 952 / 0 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.007G082400 [exp] 951 / 0 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.001G206700 [exp] 644 / 0 AT4G33430 927 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.003G023000 [exp] 644 / 0 AT4G33430 961 / 0.0 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) Potri.008G188800 [exp] 565 / 0 AT1G60800 930 / 0.0 NSP-interacting kinase 3 (.1) Potri.010G043200 [exp] 564 / 0 AT1G60800 925 / 0.0 NSP-interacting kinase 3 (.1) Potri.005G074200 [exp] 561 / 0 AT5G10290 855 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.004G108200 [exp] 552 / 0 AT5G16000 1006 / 0.0 NSP-interacting kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028716 pacid=23164604 polypeptide=Lus10028716 locus=Lus10028716.g ID=Lus10028716.BGIv1.0 annot-version=v1.0 ATGGTGGAGATGGGAGCTCTTGGGTTGATCTTGTTGTTCTTGCTGGTGCAGCCTTTGTGGCTGGTTTTGGGTAACATGGAAGGCGACGCATTGCATAACT TGAGGACCAACTTGATCGATCCGAACAATGTCCTTCAGAGCTGGGATCCCACCCTTGTGAACCCCTGCACTTGGTTTCATGTTACATGCAACAACGATAA TAGTGTCATTAGAGTGGATCTTGGCAATGCTGCTTTGTCTGGTCAGCTTGTTCCGCAGCTCGGCCAGCTTAAGAATTTGCAGTACTTGGAACTCTACAGT AACAACATAACTGGTCCAATTCCAAGTGATCTTGGGAATTTGACTAATTTGGTCAGCTTGGATCTTTACTTGAATAGCTTCAATGGTCCGATACCAGCAT CCTTGGGAAAGCTGTCGAAATTAAGATTCTTGGATCTCTCGAACAATCGTCTTTCTGGAGTGGTTCCGGATAATGGTTCATTCTCACTGTTCACCCCCAT AAGTTTTGCTAACAACTTGGACCTATGTGGGCCAGTCACCGGGCATCCTTGCCCCGGCTCTCCTCCGTTTTCACCTCCTCCTCCTTTCGTTCCACCACCG CCGATCTCAATACCAGGAGGGGGTAGTGCTACTGGAGCAATAGCTGGCGGAGTTGCTGCTGGTGCAGCATTGTTATTTGCTGCACCAGCGATAGCATTTG CTCTGTGGCGTCGGAGAAAGCCACAGGAGCTATTCTTTGATGTACCTGCGGAAGAGGATCCTGAAGTTCATCTCGGCCAGCTTAAGAGGTTCTCGTTGCG TGAATTGCAAGTAGCGACGGATACCTTCAGCAACAAGAACATTCTCGGTAGAGGAGGATTTGGTAAGGTCTACAAAGGCCGGCTTGCGGATGGTACTCTG GTGGCTGTCAAGAGACTGAAAGAGGAGCGCACGCCTGGCGGAGAGTTGCAGTTTCAGACCGAGGTCGAGATGATTAGCATGGCTGTCCATCGAAATCTCT TGAGATTACGCGGCTTCTGCATGACGCCGACTGAAAGATTGCTCGTCTACCCGTACATGGCAAATGGAAGCGTGGCGTCATGCTTGAGAGAACGCCCGCC ATCGCAGCCTCCGCTCGACTGGCCTACTCGGAAGCGAATTGCACTTGGTTCCGCTAGGGGCTTATCGTATCTACACGACCATTGTGATCCGAAGATCATT CATCGAGATGTCAAAGCTGCAAACATCTTGTTAGACGAGGAGTTCGAGGCTGTTGTCGGAGACTTCGGGTTGGCGAAGCTGATGGACTACAAGGACACTC ACGTTACTACTGCGGTACGCGGTACGATAGGCCACATTGCTCCGGAATATCTCTCCACTGGCAAATCGTCCGAAAAGACTGATGTTTTCGGGTACGGAAT CATGCTCCTGGAGCTGATTACCGGACAGAGGGCTTTCGATCTCGCTCGGCTTGCCAATGACGACGATGTCATGTTACTCGATTGGGTGAAAGGGCTACTG AAGGAGAAGAAGTTAGAGATGCTAGTGGATCCCGATCTCCAGGCGAATTACATAGATTCGGAAGTCGAGCAGCTTATCCAGGTTGCTTTACTTTGCACGC AAGGTTCGCCAATGGAGAGGCCGAAGATGTCCGAGGTAGTAAGGATGCTCGAAGGCGATGGCTTGGCCGAGAGATGGGATGAATGGCAAAAGGTCGAAAT CCTCAGGCAAGAGGTCGATCTGGCACCTCACCATACATCAGATTGGATAGTCGATTCGACCGAGAATCTTCATGCAGTTGAGTTGTCCGGTCCACGGTGA
AA sequence Show only first row Show all	>Lus10028716 pacid=23164604 polypeptide=Lus10028716 locus=Lus10028716.g ID=Lus10028716.BGIv1.0 annot-version=v1.0 MVEMGALGLILLFLLVQPLWLVLGNMEGDALHNLRTNLIDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGQLKNLQYLELYS NNITGPIPSDLGNLTNLVSLDLYLNSFNGPIPASLGKLSKLRFLDLSNNRLSGVVPDNGSFSLFTPISFANNLDLCGPVTGHPCPGSPPFSPPPPFVPPP PISIPGGGSATGAIAGGVAAGAALLFAAPAIAFALWRRRKPQELFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGTL VAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLDWPTRKRIALGSARGLSYLHDHCDPKII HRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLL KEKKLEMLVDPDLQANYIDSEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAERWDEWQKVEILRQEVDLAPHHTSDWIVDSTENLHAVELSGPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Lus10028716 [exp]	0	1
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Lus10039132 [exp]	1.7	0.9465
AT4G11950			Protein of unknown function (D...		Lus10024479 [exp]	2.4	0.9351
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10007671 [exp]	3.9	0.9210
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10027476 [exp]	4.6	0.9198
AT3G52480			unknown protein		Lus10029407 [exp]	6.2	0.9454
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10028951 [exp]	11.5	0.9141
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017926 [exp]	14.4	0.9037
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10007474 [exp]	15.5	0.8997
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Lus10039231 [exp]	16.7	0.9121
AT4G11950			Protein of unknown function (D...		Lus10002998 [exp]	19.5	0.9071

Compare expression of checked genes

Lus10028716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.