Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14290 301 / 2e-103 SBH2 sphingoid base hydroxylase 2 (.1) AT1G69640 283 / 4e-96 SBH1 sphingoid base hydroxylase 1 (.1) AT1G07420 77 / 1e-16 SMO2-1, ATSMO1, ATSMO2-2, SMO2-2 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) AT2G29390 75 / 2e-16 ATSMO2-2, SMO2-2, ATSMO2, SMO2-1 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) AT4G22756 69 / 3e-13 ATSMO1-2, ATSMO1, SMO1-2 sterol C4-methyl oxidase 1-2 (.1) AT4G22753 66 / 1e-12 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT4G12110 65 / 5e-12 ATSMO1-1, SMO1-1 sterol-4alpha-methyl oxidase 1-1 (.1) AT5G57800 44 / 6e-05 CER3, FLP1, YRE, WAX2 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028725 [exp] 359 / 3e-126 AT1G14290 358 / 3e-126 sphingoid base hydroxylase 2 (.1) Lus10006062 [exp] 336 / 3e-117 AT1G14290 352 / 6e-124 sphingoid base hydroxylase 2 (.1) Lus10037183 [exp] 295 / 9e-101 AT1G69640 422 / 3e-151 sphingoid base hydroxylase 1 (.1) Lus10030481 [exp] 293 / 3e-100 AT1G14290 414 / 4e-148 sphingoid base hydroxylase 2 (.1) Lus10036744 [exp] 292 / 1e-99 AT1G14290 421 / 7e-151 sphingoid base hydroxylase 2 (.1) Lus10012832 [exp] 290 / 6e-99 AT1G14290 414 / 5e-148 sphingoid base hydroxylase 2 (.1) Lus10006058 [exp] 150 / 3e-44 AT1G14290 75 / 6e-16 sphingoid base hydroxylase 2 (.1) Lus10001556 [exp] 79 / 7e-17 AT1G07420 458 / 3e-165 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10004324 [exp] 77 / 3e-16 AT4G22756 345 / 3e-120 sterol C4-methyl oxidase 1-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G061400 [exp] 348 / 8e-122 AT1G69640 311 / 1e-107 sphingoid base hydroxylase 1 (.1) Potri.005G200000 [exp] 341 / 3e-119 AT1G69640 315 / 7e-109 sphingoid base hydroxylase 1 (.1) Potri.005G199901 [exp] 191 / 8e-62 AT1G69640 207 / 2e-68 sphingoid base hydroxylase 1 (.1) Potri.001G245300 [exp] 77 / 2e-16 AT1G07420 476 / 2e-172 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.009G037400 [exp] 77 / 2e-16 AT1G07420 470 / 5e-170 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.003G116000 [exp] 64 / 1e-11 AT4G12110 448 / 3e-160 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.001G116500 [exp] 64 / 1e-11 AT4G12110 439 / 1e-156 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.014G069500 [exp] 58 / 9e-10 AT4G12110 403 / 2e-142 sterol-4alpha-methyl oxidase 1-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10028717 pacid=23164477 polypeptide=Lus10028717 locus=Lus10028717.g ID=Lus10028717.BGIv1.0 annot-version=v1.0 ATGGTGTTTTGGGAAGGCTACTTGAGCGACGAAGCAATGGGTATCTTGGCTCCGATCCTGGTGTACTGGTTCTACGCCGGATTCTACGAGCTTCTTCCGC CGTTGGATCGCTACAGGCTGCATCCGAGGAAGGAGGAAGATGATCAGAAGAGGTTGGTGCCATTTCGTAGTGTTGTCAAGGGCGTTTTGATCCAGCAGCT TGTTCAGGCCACTCTTGGTTCCTTCCTCTTCTATCTAACTTCAAAACTTTCTACCCCAACAACCCAAGCCCACGAACAACAACCACCAATCCATCTCCAA ATTGCTCAATTCATCATAGCCATGTTTGTCGTCGATGCCTGGCAGTACTTCGCCCACAGGTACATGCACCAAAACAAGTTTCTCTATCGTCGGGTGCACT CCCAACACCACAGATTGGTCGTACCCTATGCAATTGGGACCCTCTATAACCACCCTGCAGAGGCTGTCTTGGATACTATAGGGGGCGGATTGGCCTACTT GGTATCAGGTATGGGCCCCCGAACTGCAATATTCTTCTTCAGCTTCCACATCGTGAAGACCGTGGACGACCATTGCGGGATGTTGTTGCCTTGGAACATA CTTAGGTTTGTGTTCTACAACAATGGGGCATACCATGACATACATCACCAACTTCAAGGTAGCAAGTATAACTATTCCCAAGCATTTTTCTCAATTTGGG ATAGGGTTTTTGGGACCCATATGCCTTATGTAGTTGTGGAGAGGGATGGAGGCGGGTACGAGGCTAGGTTGGTTAAGAAAAATAGTTGA
AA sequence Show only first row Show all	>Lus10028717 pacid=23164477 polypeptide=Lus10028717 locus=Lus10028717.g ID=Lus10028717.BGIv1.0 annot-version=v1.0 MVFWEGYLSDEAMGILAPILVYWFYAGFYELLPPLDRYRLHPRKEEDDQKRLVPFRSVVKGVLIQQLVQATLGSFLFYLTSKLSTPTTQAHEQQPPIHLQ IAQFIIAMFVVDAWQYFAHRYMHQNKFLYRRVHSQHHRLVVPYAIGTLYNHPAEAVLDTIGGGLAYLVSGMGPRTAIFFFSFHIVKTVDDHCGMLLPWNI LRFVFYNNGAYHDIHHQLQGSKYNYSQAFFSIWDRVFGTHMPYVVVERDGGGYEARLVKKNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10028717 [exp]	0	1
AT4G26400			RING/U-box superfamily protein...		Lus10006449 [exp]	1.0	1.0000
AT3G19620			Glycosyl hydrolase family prot...		Lus10002127 [exp]	1.4	0.9673
					Lus10021851 [exp]	7.5	0.9408
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	8.9	0.9408
					Lus10008791 [exp]	10.0	0.9408
					Lus10012440 [exp]	10.7	0.9408
AT3G14460			LRR and NB-ARC domains-contain...		Lus10040210 [exp]	10.9	0.6195
					Lus10026713 [exp]	11.2	0.9404
AT1G04380			2-oxoglutarate (2OG) and Fe(II...		Lus10009240 [exp]	11.7	0.8728
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030546 [exp]	12.6	0.9332

Compare expression of checked genes

Lus10028717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.