Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22750 213 / 4e-69 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006058 [exp] 76 / 3e-16 AT1G14290 75 / 6e-16 sphingoid base hydroxylase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G062600 [exp] 283 / 2e-96 AT1G22750 249 / 3e-83 unknown protein Potri.005G198600 [exp] 273 / 5e-93 AT1G22750 243 / 7e-81 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07343 [flax] [poplar] DUF1475 Protein of unknown function (DUF1475)
Representative CDS sequence Show only first row Show all	>Lus10028718 pacid=23164540 polypeptide=Lus10028718 locus=Lus10028718.g ID=Lus10028718.BGIv1.0 annot-version=v1.0 ATGGAGCTCCTCACTCCATGGATGGCCGCTACTCTCGTTGATTTCTACATCAACATATTTGCCTTGGCGGTTTGGATTTGCTACAAAGAATCAAACATTG CATCTTCAGTAATTTGGGTGATTCTGTTGATTTGCTTTGGGAGCATCACCGTTTGCGCCTATATATTTCTTCAGTTCATGAAGCTGTCTCCTCAAGAATA TGCGCAAGATCCCATCTACCACGTTCTACTGCGGGATGAAAACAAGACTCTTGAAGAACGAAAGGGGAACCACTTTCCGGTGGTCATTGCAAGAATTGTT TTCACCGTTTTGGGCTGTTTGATGGTGGCAACTCTTGTTTACACTATTTTGACCGATGGCTCGCCTTTCCGCAAAGAGCTCTTAACTCCGTGGATGTGGG CGATGCTGATCGACTTCTATGCTAACATTGTGGTTCTCTCAGTGTGGGTTGCCTATAAAGAAACAAGTTGGTTTAGTGCATCTGCCTGGATAATTCTACT GATATGCTTCGGCAGTGCAACTACTTGTGCCTACATTGCATCACAGCTGTTTCAACTTGGTGCTCAAGATCCACTCTACCGAGTTTTGTTGAAAACGAAC GACAGGAAAGCGGTGCCCAAGTGCAGAATGGAACTTTCACCCACCGTCTACCAAATCAAGAAGGAAATTGGGACTATGATGCACATCGAGGCACATAAAT GTGTCTCGAGTGCGCCAAAATCCTTGATTTTCTTCTTGACTCCATAG
AA sequence Show only first row Show all	>Lus10028718 pacid=23164540 polypeptide=Lus10028718 locus=Lus10028718.g ID=Lus10028718.BGIv1.0 annot-version=v1.0 MELLTPWMAATLVDFYINIFALAVWICYKESNIASSVIWVILLICFGSITVCAYIFLQFMKLSPQEYAQDPIYHVLLRDENKTLEERKGNHFPVVIARIV FTVLGCLMVATLVYTILTDGSPFRKELLTPWMWAMLIDFYANIVVLSVWVAYKETSWFSASAWIILLICFGSATTCAYIASQLFQLGAQDPLYRVLLKTN DRKAVPKCRMELSPTVYQIKKEIGTMMHIEAHKCVSSAPKSLIFFLTP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22750			unknown protein		Lus10028718 [exp]	0	1
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10013466 [exp]	1.4	0.9138
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Lus10004565 [exp]	2.4	0.9075
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Lus10008951 [exp]	2.6	0.9257
AT1G64890			Major facilitator superfamily ...		Lus10024977 [exp]	3.5	0.9020
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10030336 [exp]	6.0	0.8920
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Lus10000906 [exp]	6.3	0.9034
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Lus10042424 [exp]	7.5	0.9005
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10017193 [exp]	8.0	0.9065
AT3G47070			unknown protein		Lus10018216 [exp]	11.5	0.9011
AT3G47070			unknown protein		Lus10040689 [exp]	13.7	0.8946

Compare expression of checked genes

Lus10028718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.