Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54750 348 / 2e-124 Transport protein particle (TRAPP) component (.1), Transport protein particle (TRAPP) component (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006060 [exp] 379 / 1e-136 AT5G54750 348 / 2e-124 Transport protein particle (TRAPP) component (.1), Transport protein particle (TRAPP) component (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G418400 [exp] 357 / 7e-128 AT5G54750 354 / 6e-127 Transport protein particle (TRAPP) component (.1), Transport protein particle (TRAPP) component (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0210 [flax] [poplar] HNOX-like PF04051 [flax] [poplar] TRAPP Transport protein particle (TRAPP) component
Representative CDS sequence Show only first row Show all	>Lus10028720 pacid=23164510 polypeptide=Lus10028720 locus=Lus10028720.g ID=Lus10028720.BGIv1.0 annot-version=v1.0 ATGGCTCCAGCTGGTCCCCGATCCGGCGACGCAGTCTTCGCTTCCGTCGAGCGCGTGAATGCAGAGCTGTTCACGCTAACTTACGGAGCGATCGTGAGGC AGTTGCTCACTGATTTGGAGGAGGTTGATGAGGTTAACAAGCAACTTGATCAAATGGGATATAACATTGGGATTCGGCTGATCGACGAGTTCCTAGCGAA ATCGAATGTCTCTAGATGTGTGGACTTTAAGGAGACGACTGAAACCATTGCCAAGGTGGGGTTCAAGATGTTTCTCGGAGTCGGTGCTTCTGTGACCAAC TGGGATGCTGAGGGGACTTGCTGCAGCATCGTTTTTGACGACAATCCTCTTGTGGACTTTGTCGAGCTTCCTGATACTTGTCAGGGGCTTTACTACTGCA ACGTTCTGAGCGGAGTCATCAGAGGAGCCCTTGAAATGGTGTCGATGAAAACCGAAGTCTCCTGGGTTCGGGATGTGCTGAGAGGCGACGACGTGTTCGA GTTGCAGGTTAAGCTCATAAAGCAAGTTCCGGAAGAGTATCCATACAAGGATGACGAGTAA
AA sequence Show only first row Show all	>Lus10028720 pacid=23164510 polypeptide=Lus10028720 locus=Lus10028720.g ID=Lus10028720.BGIv1.0 annot-version=v1.0 MAPAGPRSGDAVFASVERVNAELFTLTYGAIVRQLLTDLEEVDEVNKQLDQMGYNIGIRLIDEFLAKSNVSRCVDFKETTETIAKVGFKMFLGVGASVTN WDAEGTCCSIVFDDNPLVDFVELPDTCQGLYYCNVLSGVIRGALEMVSMKTEVSWVRDVLRGDDVFELQVKLIKQVPEEYPYKDDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54750			Transport protein particle (TR...		Lus10028720 [exp]	0	1
AT4G01897			unknown protein		Lus10038061 [exp]	1.0	0.8736
AT5G55290			ATPase, V0 complex, subunit E ...		Lus10032570 [exp]	3.2	0.8478
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Lus10011641 [exp]	3.5	0.8303
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10030294 [exp]	4.2	0.8312
AT5G61310			Cytochrome c oxidase subunit V...		Lus10025028 [exp]	5.5	0.8267
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10037143 [exp]	7.3	0.8261
AT1G15370			SNARE-like superfamily protein...		Lus10002911 [exp]	7.3	0.8140
AT1G23750			Nucleic acid-binding, OB-fold-...		Lus10030871 [exp]	7.5	0.8178
AT4G23710		VAG2 ,VATG2 ,VH...	vacuolar ATP synthase subunit ...		Lus10021301 [exp]	7.5	0.7973
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10035094 [exp]	7.7	0.8135

Compare expression of checked genes

Lus10028720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.