Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42730 76 / 1e-14 F-box family protein (.1.2) AT3G03360 76 / 2e-14 F-box/RNI-like superfamily protein (.1) AT3G58860 76 / 2e-14 F-box/RNI-like superfamily protein (.1) AT5G02700 74 / 7e-14 F-box/RNI-like superfamily protein (.1) AT5G22730 74 / 9e-14 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G42770 72 / 2e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) AT3G28410 72 / 2e-13 F-box/RNI-like superfamily protein (.1) AT5G38396 71 / 9e-13 F-box/RNI-like superfamily protein (.1) AT5G56370 69 / 1e-12 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT1G69630 68 / 5e-12 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018863 [exp] 279 / 2e-91 AT5G44950 62 / 1e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10028649 [exp] 258 / 2e-77 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10011267 [exp] 235 / 6e-74 ND 39 / 0.002 Lus10021237 [exp] 207 / 2e-63 ND / Lus10011268 [exp] 196 / 2e-60 AT5G41630 52 / 7e-08 F-box/RNI-like superfamily protein (.1) Lus10028610 [exp] 163 / 4e-48 ND / Lus10028721 [exp] 159 / 7e-47 AT5G53840 56 / 5e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10028602 [exp] 157 / 1e-43 AT1G80960 50 / 1e-06 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Lus10003089 [exp] 144 / 1e-39 AT5G53840 54 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G098700 [exp] 71 / 9e-13 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.013G146800 [exp] 69 / 3e-12 AT1G69630 71 / 5e-13 F-box/RNI-like superfamily protein (.1) Potri.017G107600 [exp] 67 / 1e-11 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.011G042900 [exp] 66 / 2e-11 AT1G61330 226 / 2e-68 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.001G322900 [exp] 64 / 1e-10 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.004G224975 [exp] 63 / 1e-10 AT5G53840 48 / 4e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.010G134200 [exp] 63 / 2e-10 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.001G395000 [exp] 60 / 3e-09 AT4G14103 89 / 4e-19 F-box/RNI-like superfamily protein (.1.2) Potri.011G121400 [exp] 58 / 1e-08 AT1G16930 149 / 9e-40 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G136200 [exp] 57 / 1e-08 AT1G56400 215 / 2e-64 F-box family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10028722 pacid=23164575 polypeptide=Lus10028722 locus=Lus10028722.g ID=Lus10028722.BGIv1.0 annot-version=v1.0 ATGATTTACAGCGAGAATAAAGCAATCGGAGATATAGCAATGGCGGCTTTGGACTCTGTTTCTTCATCACAACAAGGAGAAGAAGTCGATTGTATGAATA AGTTATTTGGTAAAGCTTGTAACTTGGGCGAAGAAGGATTGGATTGGATCAGTGAATTGCCCGATGAACTTCTCGTCAACATCATATCTCATTTGACTTT CGCCGAAGCCTTTAGAACTTCAGTGCTCTCGAGTAGATGGATAAACTTGTGGAAATCGGCCGTTTCGGTGCTCGACTTTGATGCCTCGAACGAGTTGCGA GCTATTCGCAAGCTACTCCCGACAAAAGCTGCAAGAAGACTTCCAGGGAAGAGGCGTAAGTACATGAATTGGGTGAACCGGGTTGTCTCGGAGATCCAAC AGAGTGGATGCCCGAAACTAACCAAGTTCCGGCTGGCATTTAACTTGACAAACGAATGCAATTCGGAAGGGGATATTGATAGATGGGTCAAGTTTGCGAT TTCAAAAAGGGTGGAGTCTCTGCATCTATACTTGGATGCTCATATAACTAAATCTCTTGTTTTTTCGGAGGAATGTTACAATCACGTCAAAAGTCCGGTT GGACTGTGTGATATTAGGTTCCTGAGATCCTTGCGCTTGACTTATGTTCAGATTAGCGGCGAGATTCTCGAGCATTTCGTTGCTAATTGCCCCGTGCTTG AAGAGTTAGTCGTGACATGGTCGTTTAGTCTGACAAGGCTCAAGGTTGTAGGTTCTTCTTCATTGAAGCACTTGGAAGTAAGAGGCTGCAATCTTTTGGA ATCTGTGGAGATTGGTTGCGCCCCTCGCCTAGAGAGGTTTATTTTCGGAGGAGGTGGCCGCTTGAGGGAAATCCGGGTCGGTAATTGCCCATCGCTTGTG GATATAACCTTGGTTGAGAGTTGTATTAGGAATGCAACGTTCAGAGCCCTTTCGGGATGCGCTAGTAGACTGGTGTCCCTCTACTTGAGGTCGGGCTCGT TTTGGGAGCCTATTTCGGGTGCAGCTGAACACAGCAACCTGGAGCGGCTAACTATGCAGGTTTCGGGAGGCGATTGTGCTAGTAGCATCCTTGTGTTGGT TCCTTTGATAAATGTGTGTCCCCGTTTGCACACACTGCGATTGTTTTTAGATACGCACTACTCGGAGGATTTCAGGGGTCGACCGTGGGTGGAAGTGGTT AAAGTATGCCGGGATAGCATCAAAGTTGTGGAGGTAGTCGGGTTTCGTGGTTATGAGATGGAGTATGAGTTTATGGAGTACGTGTTGGAATATTTCGTGG GGTTAGAGAGAATAGTGATTGATTGGTCGGCTACTTCTTTCCCTAATGAAGATAGTACTTGTCTTAATGCGACGGTATCGATGCCTCGATGCAGCGAGGA CCAACTCTGTGAAGCCGAAAAGCGTGCATTGGAGCTGAAATCACGAGCACCCTCAACGATTGAATTCCTTGTAATTTAG
AA sequence Show only first row Show all	>Lus10028722 pacid=23164575 polypeptide=Lus10028722 locus=Lus10028722.g ID=Lus10028722.BGIv1.0 annot-version=v1.0 MIYSENKAIGDIAMAALDSVSSSQQGEEVDCMNKLFGKACNLGEEGLDWISELPDELLVNIISHLTFAEAFRTSVLSSRWINLWKSAVSVLDFDASNELR AIRKLLPTKAARRLPGKRRKYMNWVNRVVSEIQQSGCPKLTKFRLAFNLTNECNSEGDIDRWVKFAISKRVESLHLYLDAHITKSLVFSEECYNHVKSPV GLCDIRFLRSLRLTYVQISGEILEHFVANCPVLEELVVTWSFSLTRLKVVGSSSLKHLEVRGCNLLESVEIGCAPRLERFIFGGGGRLREIRVGNCPSLV DITLVESCIRNATFRALSGCASRLVSLYLRSGSFWEPISGAAEHSNLERLTMQVSGGDCASSILVLVPLINVCPRLHTLRLFLDTHYSEDFRGRPWVEVV KVCRDSIKVVEVVGFRGYEMEYEFMEYVLEYFVGLERIVIDWSATSFPNEDSTCLNATVSMPRCSEDQLCEAEKRALELKSRAPSTIEFLVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42730			F-box family protein (.1.2)		Lus10028722 [exp]	0	1
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10038637 [exp]	14.4	0.8411
AT1G55340			Protein of unknown function (D...		Lus10013616 [exp]	15.2	0.8355
AT1G64385			unknown protein		Lus10033958 [exp]	17.8	0.8516
AT1G36310			S-adenosyl-L-methionine-depend...		Lus10040430 [exp]	19.8	0.8641
AT2G25310			Protein of unknown function (D...		Lus10001919 [exp]	31.1	0.7960
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10019177 [exp]	37.8	0.8106
AT4G27040		VPS22	EAP30/Vps36 family protein (.1...		Lus10002292 [exp]	50.9	0.7897
AT3G04310			unknown protein		Lus10003583 [exp]	51.0	0.7954
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10018686 [exp]	57.2	0.8042
AT3G10572		APEM9	ABERRANT PEROXISOME MORPHOLOGY...		Lus10040572 [exp]	57.8	0.8231

Compare expression of checked genes

Lus10028722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.