Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20990 220 / 1e-69 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37800 84 / 1e-17 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37820 82 / 1e-17 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G16050 79 / 6e-17 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44380 72 / 1e-14 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G37810 72 / 3e-14 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G28270 67 / 1e-12 Cysteine/Histidine-rich C1 domain family protein (.1) AT2G44370 67 / 2e-12 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G43520 66 / 3e-12 Cysteine/Histidine-rich C1 domain family protein (.1) AT5G40590 63 / 3e-11 Cysteine/Histidine-rich C1 domain family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017477 [exp] 89 / 5e-20 AT2G16050 340 / 4e-119 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10003919 [exp] 65 / 6e-12 AT2G44380 179 / 2e-56 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10037470 [exp] 62 / 2e-10 AT2G44380 177 / 5e-52 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10016256 [exp] 59 / 1e-09 AT2G27660 107 / 8e-26 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10021061 [exp] 46 / 2e-05 AT2G27660 98 / 3e-22 Cysteine/Histidine-rich C1 domain family protein (.1) Lus10004165 [exp] 44 / 0.0002 AT2G27660 95 / 3e-21 Cysteine/Histidine-rich C1 domain family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G258800 [exp] 255 / 1e-83 AT1G20990 270 / 1e-89 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.009G110500 [exp] 81 / 2e-17 AT2G16050 338 / 6e-119 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.004G149500 [exp] 78 / 2e-16 AT2G16050 339 / 3e-119 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.004G209200 [exp] 73 / 9e-15 AT2G16050 278 / 1e-94 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.001G229500 [exp] 72 / 6e-14 AT2G27660 171 / 5e-48 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.010G198200 [exp] 65 / 1e-11 AT2G37820 166 / 1e-49 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.012G038400 [exp] 62 / 9e-11 AT2G27660 218 / 3e-65 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.001G229900 [exp] 61 / 2e-10 AT2G28270 223 / 2e-72 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.016G057800 [exp] 61 / 4e-10 AT5G22355 273 / 4e-82 Cysteine/Histidine-rich C1 domain family protein (.1) Potri.010G205200 [exp] 54 / 2e-08 AT2G16050 159 / 3e-48 Cysteine/Histidine-rich C1 domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10028723 pacid=23164483 polypeptide=Lus10028723 locus=Lus10028723.g ID=Lus10028723.BGIv1.0 annot-version=v1.0 ATGTACAAAACCAAACCCTTCTCCAAAACCACCACCTTCTCAACCAAGTACAACGTTGCTACTCCTACTCCTGCTCCTACTCCAGCCACCGCGACCATAG GGTTCGTGGAGTTCCCATCGTCCCCGGAGAAGCTGATCTGGGGAGATGGGATAGTCCACTCTGGCCACCCTCAACACCGCTTGTACAAACTCGACTTGCC GGACCTTTTCACTTGCTCCGGCTGCAAGGAGTACGGCTCCGGCAAGAGCTTCACTTGCCAACAGTGTGACTTCCGGCTGCATGAGTTTTGTGCTTTGGCT CCTCCACGTTTGAAAGCTCATCCTCTTCACTTGCAGCATCAACTATTGTTCTCTTCCAAGCCAGCACCAAAAGCGGGAATCCTCCAAAAGTCTAAGTGCG ACGTGTGCGGGAAAGCCACAAAGGGCTACACCTTCCGCTGCAGCGCGTGCACCTACCAAATGCACCCTTGTTGCGCCATGCTCTCCGACTGCATCACAAT CTCGATCCACCCACACCCGCTCAAGATCCTCCCTTCTTCCTCCTCGGTGGTCGCGACCACCCCTGCTCAAATGACCACACAACAATCGTCACCATTCCCT TCCACTACTGCAACCGCTCTCCCAGCAGCGCTGCTGGACATCAGCAGCGCGTGCGAGGAGTGCAAGAAACGTAGGTCGGGAAGGATGTACAAGTGCACAA TCTGTAAGGGGTACTACCTCCATGCAGTGTGTGCCAAGGACATGGTCAACGGGCTCCAGGCGAACGGGATCAAGGGGAAGGAGAAAGGGAACGGTAACAA GATTTTGGGGACAGCGGCACGCGTGGCGTCGCTTGTTGTGATTGAGTTCCTCGGCGGGCTTGTCGAAGGGTTTGGAGAAGGAATGGGGCAGGTTTTGGTC CAGAGTATTACTAATACTAAAGGATCACCCCTACCGCTGCCGCCATCACCACCACTGACATTGTCGAGTAACGGTTATTCCGACAAGAACATTCCTACCA AGGGGGCTAAGTGTTGTGGCACTAGGGGGTGGATCTAA
AA sequence Show only first row Show all	>Lus10028723 pacid=23164483 polypeptide=Lus10028723 locus=Lus10028723.g ID=Lus10028723.BGIv1.0 annot-version=v1.0 MYKTKPFSKTTTFSTKYNVATPTPAPTPATATIGFVEFPSSPEKLIWGDGIVHSGHPQHRLYKLDLPDLFTCSGCKEYGSGKSFTCQQCDFRLHEFCALA PPRLKAHPLHLQHQLLFSSKPAPKAGILQKSKCDVCGKATKGYTFRCSACTYQMHPCCAMLSDCITISIHPHPLKILPSSSSVVATTPAQMTTQQSSPFP STTATALPAALLDISSACEECKKRRSGRMYKCTICKGYYLHAVCAKDMVNGLQANGIKGKEKGNGNKILGTAARVASLVVIEFLGGLVEGFGEGMGQVLV QSITNTKGSPLPLPPSPPLTLSSNGYSDKNIPTKGAKCCGTRGWI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20990			Cysteine/Histidine-rich C1 dom...		Lus10028723 [exp]	0	1
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Lus10041787 [exp]	7.1	0.9125
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10043075 [exp]	10.7	0.9031
AT1G60360			RING/U-box superfamily protein...		Lus10028063 [exp]	12.1	0.8962
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10042445 [exp]	15.0	0.8920
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Lus10001754 [exp]	16.0	0.8896
AT1G76040		CPK29	calcium-dependent protein kina...		Lus10017251 [exp]	17.3	0.8891
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026224 [exp]	18.5	0.8873
AT5G36930			Disease resistance protein (TI...		Lus10008526 [exp]	22.0	0.8808
AT5G47510			Sec14p-like phosphatidylinosit...		Lus10028938 [exp]	22.1	0.8812
AT5G51350		MORE LATERAL GR...	MORE LATERAL GROWTH1, Leucine-...		Lus10036321 [exp]	27.2	0.8470

Compare expression of checked genes

Lus10028723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.