Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34220 382 / 7e-127 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G35730 251 / 5e-78 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G25420 234 / 2e-73 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT2G19710 202 / 2e-56 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G29440 184 / 4e-50 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G14830 113 / 6e-27 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G13340 110 / 2e-26 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G52315 102 / 6e-24 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G79910 99 / 3e-22 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G32350 92 / 2e-19 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006061 [exp] 805 / 0 AT1G34220 417 / 2e-140 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10041836 [exp] 238 / 5e-73 AT4G35730 423 / 2e-145 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10028383 [exp] 232 / 1e-70 AT4G35730 415 / 2e-142 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10000978 [exp] 230 / 6e-66 AT2G19710 308 / 6e-89 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10040542 [exp] 230 / 8e-66 AT2G19710 309 / 2e-89 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10041442 [exp] 213 / 1e-65 AT1G25420 270 / 6e-90 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Lus10034330 [exp] 177 / 3e-51 AT1G25420 218 / 3e-69 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Lus10041468 [exp] 155 / 6e-42 AT1G13340 239 / 1e-74 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10034303 [exp] 151 / 2e-40 AT1G13340 243 / 5e-76 Regulator of Vps4 activity in the MVB pathway protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G117100 [exp] 402 / 5e-135 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.019G087400 [exp] 385 / 2e-128 AT1G34220 357 / 5e-116 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.008G121300 [exp] 250 / 1e-79 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.007G059800 [exp] 247 / 4e-76 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.006G149800 [exp] 237 / 3e-68 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.010G127000 [exp] 145 / 2e-38 AT1G13340 268 / 1e-85 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.017G113900 [exp] 127 / 4e-33 AT1G13340 211 / 9e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.004G100900 [exp] 129 / 7e-32 AT1G13340 223 / 1e-66 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.013G135700 [exp] 128 / 1e-31 AT2G14830 228 / 2e-67 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.004G038600 [exp] 122 / 9e-30 AT2G14830 175 / 3e-48 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [flax] [poplar] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Lus10028724 pacid=23164621 polypeptide=Lus10028724 locus=Lus10028724.g ID=Lus10028724.BGIv1.0 annot-version=v1.0 ATGTCGATGCTCGACGCCTTCTTCAGTAACAAAGGATTCAAAGCTGCCAAATGTAAAACCCTGCTGAAGCTGACGATACCGCGGATTAAGCTGCTGAGGA ACAGGAGGGAGATTCAGATCAGGCAGATGCGTCGCGATATTGCCAAGCTTCTGGAGAATGGACAGGAAGCTACTGCTCGAATCCGAGTTGAACATATTGT AAGAGAAGAGAACATGATGGCTGCTCAAGAAGTCCTTGAGCTCTTCTGTGAGCTTATTGCTGTACGCCTTCCAATCATCGAAGCACAAAGGGAATGTCCT CTGGATTTGAAAGAAGCGATATCCAGTATCTGCTTTGCTGCACCAAGATGCGCCGACTTGCCAGAGTTGATCCAGGTCCAGATGATGTTTGCCTCCAAAT ATGGAAAAGAGTTTGTCTCTGCTGCAACTGAACTTATGCCAGATTGTGGGGTTAATCGCCAGATAGTGGAGCTCCTATCAGTTCGTGCGCCTTCCCCGGA TGTAAAACTGAAACTTCTCAAGGCAATTGCTGAGGAACATGAGTTGGACTGGGATCCGGCTGAGTCCGAAGCTGAACTTTTGAAACCGCATGAAGATTTA TTGAACGGTCCATCGCAGTATGTCACTGAGTCGTCAAAGTTGCCTTTCCCGGATGAGAACAAAGATGAAGCTTTAAGCTCCGATCATGCAGGTGCTAGTC ATGAGCTACCCGACACGGATTCCAGTGCCGATGAGCTAGACTTTCCCGATGTTCCCAAGCTCACAGTAAGGCCTAATCCAGCTGCTCCTTCTGCACCAGA TACTTCAAATTCCGCCGGCACCCATGAGGTTATATTTGAAGAAATGCCAATGGCGTCGATATTGGCATTGAACAACAACGAAGGTCATGGTTCCCAGGAA AAAAAGTTCTTGCCTTTCATCACTACTCCACAGGTTGCATCAGCATCTGCTTCGCCTACAAGAGAACACAGCTCATCACCGGAGCCTCGAAGTAAGCCCG ACATTGATCTGCACGATATCTTGGTCTCGGCTCAGGCTGCTGCAGAGACTGCAGAGCGTGCAGCAGCAGCAGCCCGATCAGCTGCCACGATTGCCCAGGC GAAGATCAAGGAGCTCTCCAAGATCAACAGCGACAAGTCGCTTGATCTCGAGGCCGACAATCCTTTCACTACCGAGATCGCGAACCAGCCTGACTTGGTG GACAAGGTCCATCATCTCAGCCACCAACACTATTCCTTCAAATCTCCAGAGCCCTTCGAGAAAGACGGGATGGTATTTGACTCTCTGAGGGATGAGAGTG TTCTGAGAAGAGAATCTCCTCGCCCGGAGATGCAACGGCTCACTTCCATCGACGAAGACCCTTACCTCTCATACCCCAACTTGTTTGCATCATCATCGTC ACGCAACTCTAGATCGTCCCCTTGTTTCGATTCGGACCCACGATCTCCACATTAG
AA sequence Show only first row Show all	>Lus10028724 pacid=23164621 polypeptide=Lus10028724 locus=Lus10028724.g ID=Lus10028724.BGIv1.0 annot-version=v1.0 MSMLDAFFSNKGFKAAKCKTLLKLTIPRIKLLRNRREIQIRQMRRDIAKLLENGQEATARIRVEHIVREENMMAAQEVLELFCELIAVRLPIIEAQRECP LDLKEAISSICFAAPRCADLPELIQVQMMFASKYGKEFVSAATELMPDCGVNRQIVELLSVRAPSPDVKLKLLKAIAEEHELDWDPAESEAELLKPHEDL LNGPSQYVTESSKLPFPDENKDEALSSDHAGASHELPDTDSSADELDFPDVPKLTVRPNPAAPSAPDTSNSAGTHEVIFEEMPMASILALNNNEGHGSQE KKFLPFITTPQVASASASPTREHSSSPEPRSKPDIDLHDILVSAQAAAETAERAAAAARSAATIAQAKIKELSKINSDKSLDLEADNPFTTEIANQPDLV DKVHHLSHQHYSFKSPEPFEKDGMVFDSLRDESVLRRESPRPEMQRLTSIDEDPYLSYPNLFASSSSRNSRSSPCFDSDPRSPH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34220			Regulator of Vps4 activity in ...		Lus10028724 [exp]	0	1
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10028462 [exp]	1.0	0.8797
AT1G34220			Regulator of Vps4 activity in ...		Lus10006061 [exp]	2.6	0.8652
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007949 [exp]	4.2	0.8764
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10037056 [exp]	6.7	0.8450
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011572 [exp]	9.4	0.8675
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Lus10031728 [exp]	9.5	0.8704
AT5G54540			Uncharacterised conserved prot...		Lus10014803 [exp]	11.3	0.8632
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10021587 [exp]	12.0	0.8356
AT1G79420			Protein of unknown function (D...		Lus10001755 [exp]	14.1	0.8671
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Lus10031152 [exp]	14.4	0.8402

Compare expression of checked genes

Lus10028724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.