Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14290 343 / 6e-120 SBH2 sphingoid base hydroxylase 2 (.1) AT1G69640 330 / 4e-115 SBH1 sphingoid base hydroxylase 1 (.1) AT2G29390 64 / 2e-12 ATSMO2-2, SMO2-2, ATSMO2, SMO2-1 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) AT1G07420 61 / 4e-11 SMO2-1, ATSMO1, ATSMO2-2, SMO2-2 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) AT4G22753 54 / 3e-08 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT4G12110 53 / 6e-08 ATSMO1-1, SMO1-1 sterol-4alpha-methyl oxidase 1-1 (.1) AT4G22756 51 / 2e-07 ATSMO1-2, ATSMO1, SMO1-2 sterol C4-methyl oxidase 1-2 (.1) AT5G57800 50 / 5e-07 CER3, FLP1, YRE, WAX2 FACELESS POLLEN 1, ECERIFERUM 3, Fatty acid hydroxylase superfamily (.1) AT3G02590 45 / 3e-05 Fatty acid hydroxylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006062 [exp] 473 / 2e-171 AT1G14290 352 / 6e-124 sphingoid base hydroxylase 2 (.1) Lus10028717 [exp] 341 / 4e-119 AT1G14290 301 / 1e-103 sphingoid base hydroxylase 2 (.1) Lus10037183 [exp] 334 / 2e-116 AT1G69640 422 / 3e-151 sphingoid base hydroxylase 1 (.1) Lus10036744 [exp] 330 / 8e-115 AT1G14290 421 / 7e-151 sphingoid base hydroxylase 2 (.1) Lus10030481 [exp] 326 / 3e-113 AT1G14290 414 / 4e-148 sphingoid base hydroxylase 2 (.1) Lus10012832 [exp] 323 / 3e-112 AT1G14290 414 / 5e-148 sphingoid base hydroxylase 2 (.1) Lus10006058 [exp] 97 / 8e-24 AT1G14290 75 / 6e-16 sphingoid base hydroxylase 2 (.1) Lus10001556 [exp] 69 / 1e-13 AT1G07420 458 / 3e-165 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10040739 [exp] 64 / 1e-11 AT2G29390 454 / 5e-164 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G061400 [exp] 408 / 1e-145 AT1G69640 311 / 1e-107 sphingoid base hydroxylase 1 (.1) Potri.005G200000 [exp] 399 / 5e-142 AT1G69640 315 / 7e-109 sphingoid base hydroxylase 1 (.1) Potri.005G199901 [exp] 226 / 1e-75 AT1G69640 207 / 2e-68 sphingoid base hydroxylase 1 (.1) Potri.001G245300 [exp] 68 / 2e-13 AT1G07420 476 / 2e-172 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.009G037400 [exp] 65 / 3e-12 AT1G07420 470 / 5e-170 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.001G116500 [exp] 56 / 6e-09 AT4G12110 439 / 1e-156 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.003G116000 [exp] 56 / 8e-09 AT4G12110 448 / 3e-160 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.014G069500 [exp] 47 / 6e-06 AT4G12110 403 / 2e-142 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.017G116600 [exp] 46 / 1e-05 AT3G02580 455 / 1e-163 DWARF 7, BOULE 1, sterol 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10028725 pacid=23164491 polypeptide=Lus10028725 locus=Lus10028725.g ID=Lus10028725.BGIv1.0 annot-version=v1.0 ATGGTGTTTTGGGAAGGATATGTGAGCGATGAAACAATGGGGACGTTTGCCCCAATAGTGGTGTACTGGCTGTACGCTGGGATGTATCAGATTCTTCCTC CGTTAGATCGGTATCGATTGCACACTAGGAAAGAAGAGGAGAAGAAGAACCTGGTGACTATGAGCAATGTCGTTAAGGGTGTTTTGATTCAGCAGCTTGT CCAGATCGTTGCTGCTCATTTGCTCTTCTTGCTAACATCAACCACTGCAGCATCCGAGACGATCACCCAACCCTCAACCCCAATCCAACTACTCCAAATC GTTCTAGCAATGTTCGTGATGGACACATGGCAGTACTTCGTTCACCGTTACATGCACCAGAACAAGTTCCTATACCGCCATGTACATTCCCAACACCACC GACTAGTTGTCCCCCAGGCGATCGGAGCTCTCTACAACCACCCGCTCGAGGGCCTCTTGCTGGACACAGTCGGAGGGGCAATCTCGTTCCTCGTTTCGGG AATGACAGCAAGGACCGGAGTGTTCTTCTTCTGCTTCGCCACAGTGAAAACCGTCGATGACCACTGCGGACTCTGGCTCCCAGGCAATGTCTTCCACTTG TTGTTTACCAACAACTCGGCCTACCACGACATCCACCATCAACTCCAAGGTACCAAGTACAACTACTCTCAGCCCTTCTTCCCACTATGGGATAAGCTCC TGGGAACCCATATGCCGTACGCTGTCGTAAAGCGCGTGGAAGGAGGCTACGAGGCTAAGTTGATGAAAGACTGA
AA sequence Show only first row Show all	>Lus10028725 pacid=23164491 polypeptide=Lus10028725 locus=Lus10028725.g ID=Lus10028725.BGIv1.0 annot-version=v1.0 MVFWEGYVSDETMGTFAPIVVYWLYAGMYQILPPLDRYRLHTRKEEEKKNLVTMSNVVKGVLIQQLVQIVAAHLLFLLTSTTAASETITQPSTPIQLLQI VLAMFVMDTWQYFVHRYMHQNKFLYRHVHSQHHRLVVPQAIGALYNHPLEGLLLDTVGGAISFLVSGMTARTGVFFFCFATVKTVDDHCGLWLPGNVFHL LFTNNSAYHDIHHQLQGTKYNYSQPFFPLWDKLLGTHMPYAVVKRVEGGYEAKLMKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14290		SBH2	sphingoid base hydroxylase 2 (...		Lus10028725 [exp]	0	1
AT1G67930			Golgi transport complex protei...		Lus10007330 [exp]	3.0	0.9180
AT4G09160			SEC14 cytosolic factor family ...		Lus10009458 [exp]	3.2	0.8949
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10037423 [exp]	5.3	0.8928
AT2G32380			Transmembrane protein 97, pred...		Lus10039668 [exp]	6.0	0.8894
AT2G21520			Sec14p-like phosphatidylinosit...		Lus10040431 [exp]	7.9	0.8815
AT5G57460			unknown protein		Lus10028963 [exp]	8.7	0.8931
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10038318 [exp]	10.2	0.8906
AT5G57460			unknown protein		Lus10007798 [exp]	14.1	0.8617
AT1G75760			ER lumen protein retaining rec...		Lus10021097 [exp]	14.2	0.8244
AT4G01400			unknown protein		Lus10030195 [exp]	15.3	0.8802

Compare expression of checked genes

Lus10028725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.