Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71720 501 / 6e-175 PDE338 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) AT5G30510 105 / 2e-24 ARRPS1, RPS1 ribosomal protein S1 (.1) AT3G23700 63 / 2e-10 Nucleic acid-binding proteins superfamily (.1) AT5G14580 44 / 0.0003 polyribonucleotide nucleotidyltransferase, putative (.1) AT3G11964 43 / 0.0006 RNA binding;RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028698 [exp] 783 / 0 AT1G71720 516 / 0.0 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Lus10017100 [exp] 96 / 7e-21 AT5G30510 590 / 0.0 ribosomal protein S1 (.1) Lus10037822 [exp] 92 / 8e-20 AT5G30510 583 / 0.0 ribosomal protein S1 (.1) Lus10022587 [exp] 72 / 2e-13 AT3G23700 374 / 3e-128 Nucleic acid-binding proteins superfamily (.1) Lus10021484 [exp] 68 / 4e-12 AT3G23700 197 / 4e-60 Nucleic acid-binding proteins superfamily (.1) Lus10011108 [exp] 50 / 4e-06 AT4G29060 1031 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10043229 [exp] 49 / 1e-05 AT4G29060 1035 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10008763 [exp] 45 / 0.0001 AT5G14580 1215 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10016216 [exp] 43 / 0.0006 AT3G11964 2151 / 0.0 RNA binding;RNA binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G197900 [exp] 538 / 0 AT1G71720 501 / 2e-174 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Potri.002G063400 [exp] 535 / 0 AT1G71720 514 / 2e-179 PIGMENT DEFECTIVE 338, Nucleic acid-binding proteins superfamily (.1) Potri.008G101100 [exp] 95 / 8e-21 AT5G30510 615 / 0.0 ribosomal protein S1 (.1) Potri.010G150300 [exp] 92 / 7e-20 AT5G30510 575 / 0.0 ribosomal protein S1 (.1) Potri.014G148500 [exp] 54 / 1e-07 AT3G23700 439 / 2e-153 Nucleic acid-binding proteins superfamily (.1) Potri.015G024400 [exp] 43 / 0.0007 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF00575 [flax] [poplar] S1 S1 RNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10028726 pacid=23164589 polypeptide=Lus10028726 locus=Lus10028726.g ID=Lus10028726.BGIv1.0 annot-version=v1.0 ATGCCACTACTTCATTACCTTCACCTTCACAATCTCCATCTCCAGCTCCACAATTCTCTCCCCCTTCCATTACAACTCCCTCGCTCCACTCGCATCAGAA ACAGCCATTTCATCTCCATCCACAATTCCTCAACTCAGAACAAGCATCCCCATCTCGCACTCTGCTCCAAAGATGACTCCTTTGAAGAGAGCGACGAGCT CGAGTTGCGGAATAAGCCCTCTCCGTCTCCGGTTAGCGACGGCGGCGATTATCCACCGCCGCCTCCGCCGGAGGAAGTGGATTCCGAAGAGAAGAGGATA AGGGACGAGAAGCTAGCTCCGTTTCTGAAGTTCTTCAAGCCCAGGGACGCGTCAGGTGAGGTAATTGAACACGAAGAGGAAGATGAAATTAGGGATTTGG ATGAAAATCTAGATGAAATTAGGGATTTGACCAATAAAGTCAATGTGGAGTATTACAATCCGAAAGCCGGGGAATTTGTAATCGGGGTAGTGGTTTCGGG GAATGAGAACAAGCTTGATGTTAACGTAGGTGCTGATTTGCTTGGAACGATGCTGAGTAAAGAAGTGATGCCATTGTACAGAAAGGAGATGGATTATCTT CTGTGTGATATGGAGAAGGATTGTGAGGACTTCTGCGTTGGGGGAAAAGTTGGCATTGTTAAAAGTGAGCTTGCTTTGAGAGGCGGTACCGGTCCGGGGA GGCCTGTTGTGGAGAATGGCACTGTGTTGTTTGCTGAGGTTCTGGGGAGGACTTTAAGCGGCCGGCCTTTGCTTTCGACGAGAAGGATGTTTCGGAGGAT CGCTTGGACTCGAGCCAGGCAGATAAAGGAACTGAATGAGCCGATTGAGGTGAAAATCACAGAGTGGAATACTGGAGGACTTCTCACAAGAATAGAGGGA TTACGAGCTTTCCTTCCGAAGATTGAGCTAGTTCAGAGAGTGAACAACTTCAAGGAGTTGAAAGAAAATGTTGGCCGTCGATTGAATGTACTGATCACGC GGATAAATGAGAGCAGTAACGACCTTATACTCAGCGAGAAGGATGCGTGGGAAATGTTGAATCTTAAGGAAGGGACGCTTCTTGAAGGAACAGTTAAGGC GATTTTCCCTTACGGAGCGCAAGTTCAAATCGGGGAAAGTAACAGAAGCGGGCTGTTGCATATCTCGAAGATGAGCAAGAAACGAGTCGGTACTGTGGAT GATGTGCTGAAAATCGACGAGAAGGTCAAAGCCCTAGTCGTGAAGTCGATGTTTACTGGGAAAATCTCTCTCAGTACTGCTGACCTTGAAAGTGAGGCTG GACTGTTCCTATCTGATAAAGAGAGGGTCTTTCTCGAGGCAGAAGAAATGGCTAAAAAGTACAGGCAAAAGCTACAAGCTGCTACCCGAAAGGGTAAGAA ATCGGTAAAACCTCTAACCGGGTCGAGCATGTTTGATCAGGAGGACTCGATTGTGTACGCGAACTGGAAGTGGTTCAAGTTCGAAAGCGACGTCGAAGGG GAATGA
AA sequence Show only first row Show all	>Lus10028726 pacid=23164589 polypeptide=Lus10028726 locus=Lus10028726.g ID=Lus10028726.BGIv1.0 annot-version=v1.0 MPLLHYLHLHNLHLQLHNSLPLPLQLPRSTRIRNSHFISIHNSSTQNKHPHLALCSKDDSFEESDELELRNKPSPSPVSDGGDYPPPPPPEEVDSEEKRI RDEKLAPFLKFFKPRDASGEVIEHEEEDEIRDLDENLDEIRDLTNKVNVEYYNPKAGEFVIGVVVSGNENKLDVNVGADLLGTMLSKEVMPLYRKEMDYL LCDMEKDCEDFCVGGKVGIVKSELALRGGTGPGRPVVENGTVLFAEVLGRTLSGRPLLSTRRMFRRIAWTRARQIKELNEPIEVKITEWNTGGLLTRIEG LRAFLPKIELVQRVNNFKELKENVGRRLNVLITRINESSNDLILSEKDAWEMLNLKEGTLLEGTVKAIFPYGAQVQIGESNRSGLLHISKMSKKRVGTVD DVLKIDEKVKALVVKSMFTGKISLSTADLESEAGLFLSDKERVFLEAEEMAKKYRQKLQAATRKGKKSVKPLTGSSMFDQEDSIVYANWKWFKFESDVEG E

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Lus10028726 [exp]	0	1
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Lus10028698 [exp]	1.4	0.9572
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005030 [exp]	3.7	0.9325
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10004319 [exp]	4.2	0.9466
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Lus10002916 [exp]	5.5	0.9527
AT3G12930			Lojap-related protein (.1)		Lus10002544 [exp]	9.2	0.9230
AT1G30610		EMB88, EMB2279	EMBRYO DEFECTIVE 88, EMBRYO DE...		Lus10023384 [exp]	11.4	0.8981
AT2G21385			unknown protein		Lus10017494 [exp]	11.6	0.9401
AT2G04360			unknown protein		Lus10012308 [exp]	12.4	0.9278
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10016604 [exp]	13.4	0.9409
AT5G55220			trigger factor type chaperone ...		Lus10010250 [exp]	14.4	0.9324

Compare expression of checked genes

Lus10028726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.