Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71710 659 / 0 DNAse I-like superfamily protein (.1.2) AT1G34120 578 / 0 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT4G18010 425 / 4e-141 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT3G63240 298 / 1e-92 DNAse I-like superfamily protein (.1) AT2G32010 288 / 9e-89 CVL1 CVP2 like 1 (.1.2) AT1G05470 289 / 1e-88 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT5G65090 271 / 1e-83 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT2G37440 268 / 3e-83 DNAse I-like superfamily protein (.1.2) AT5G04980 263 / 6e-81 DNAse I-like superfamily protein (.1.2) AT2G01900 240 / 2e-72 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028697 [exp] 1212 / 0 AT1G71710 675 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10011041 [exp] 441 / 2e-147 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10003010 [exp] 424 / 4e-141 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10040107 [exp] 428 / 1e-138 AT4G18010 638 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10006597 [exp] 298 / 4e-95 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10039352 [exp] 299 / 1e-92 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10008934 [exp] 271 / 2e-86 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2) Lus10028884 [exp] 275 / 7e-85 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10034857 [exp] 275 / 9e-85 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G197800 [exp] 811 / 0 AT1G71710 658 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.002G063500 [exp] 757 / 0 AT1G71710 631 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.001G145900 [exp] 476 / 1e-160 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.003G088300 [exp] 462 / 4e-155 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.005G212700 [exp] 377 / 6e-123 AT3G63240 778 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G155700 [exp] 372 / 7e-121 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.002G050000 [exp] 292 / 2e-90 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1) Potri.010G084300 [exp] 291 / 6e-90 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.010G247800 [exp] 286 / 7e-89 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.007G090200 [exp] 278 / 6e-85 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10028727 pacid=23164479 polypeptide=Lus10028727 locus=Lus10028727.g ID=Lus10028727.BGIv1.0 annot-version=v1.0 ATGAAGGCCAAGGCGAAGAAGCAGCAGCAGGAATCCTCCCCAGCTGACGATTCCGCGTCCGTCAAGTCCCGCAGCTCCAAGCAGAACCCCGAGCTGTTCT GGCCTAGGCTTGTCGTTCGGAAGTGGCTGAACATAGCTGCGAAGGAGTCTGATTACAGCGCGGATACTGAGTCCGACTGCGACTCATCTTCATCCGACGG CAGCGGTGAATCCGATTCCGAAGAGATCAGTCCACTCGGGAAACAAACTCGATTTAGAGAAGACGACAACCCTCATGTTGACGATGCGCTTCCATTTCTG CACAGACGTAGGAAGTCAGAAACTTTTAGAGCCCAATACATCAGTCCTAAAGAACTCAGGATCCGAGTTGCTACATGGAATGTTGGAGGCAAAGTGCCAC CGGATGATCTGGATATTGATGGCTGGGTTGATACTGATGAACCTGCAGATATATTTGTACTTGGTCTTCAGGAAATTGTACCGTTAAATGCTGGGAACAT CTTTGGCGCTGAAGACAACAGGCCAGCCACAAAGTGGGAAAACATCATACGGGACACGTTAAACAGTATTCGACCCGTAAGGACCAAGGTCAAATGCTAT AGTGATCCAGTATCTCCATCGAAATTCAATCCGTCTGATGAAGTTCCGGGAGCTGTGGAGGAGATTCTACTAGAGAGTGATAGCGACATTGGAGAGGAAG TCCATCCTATAGATGAAGATCCCATCGATTTTGCTGAAATCAAAGATAGACCGGAGGCTTATCCTTTCGACGTGTTACTCGATTCTAACCTTCGCCACAT TACCATTCCGGAAGAGAGCGACTTCCAGAGGCAAGCTTCTCAGAAGTCATTGAATAGATTGAACTGCATTCGCAACGATGACAATGCATCAGAAGATATG GATGAATCCGGGGTAACACCGCAAGCTAGGAAACTGACCAGAATGCTCAGTGGTTCCGAAAGGATCGGGTTAAGCTGGCCAGAGCCCCAGTTGAACTTGC TGTCAGGACATGTCTTACAAAGACCGGGCTCTTTCAAATCTATAAAATCTCTTTCTGCAACGAAGTCTTTTGAAAGATACAGTTCTTTCAAGTCAGTAGC GAACGATATGCAAACCGGGATCGCTTTGCTTACTGAGATCGACCTCGAATCCCTCCTGAAGCGTAAACGATCATCTTATGTGAGGATAGTCAGTAAGCAA ATGGTTGGCATTTTCATCACCGTATGGGTTCGTAGGCACTTGCGCAAGCATATTCAGAATGTGAAAGTCTCCACCGTTGGCGTTGGTGTTATGGGCTACA TTGGCAACAAGGGATCAGTATCAGTAAGCATGTCGGTGTATCAGACGCCATTCTGTTTCGTGTGCACTCACCTGACATCAGGTGAAAAGGAAGGGGACGA GCTCAAAAGAAATGCTGACATTCGCGAGATACATAAACGAACGAATTTTCGCTCTGTTGCAGCTGTCGGTCTTCCTAAGACCATTAAAGATCACGAGAGA ATCATATGGTTAGGTGATCTGAATTACCGTATAAACTTGTCGTACGAGAGAACTCGCGAACTTATAGCCCATAAGCAGTTATCAACACTTGCAGAATACG ACCAGCTGACACGAGAGTTTCGAAAAGGTCGAGTTTTCGATGGATGGCGGGAAGGTAAATTGACCTTCCTACCTACGTACAAGTACGAGTTTAACTCAAC CAGATACTGTGGTGAAGATCCAAAGGCTGCAGGGAGGCGTACTCCTGCATGGTGTGACCGAATTCTTTCGCACGGCAAAGGATTCAAGCTCCTGAGTTAC CGAAGAACCGAGCTGAAGTTCTCCGACCATCGCCCAGTGACCGCAACATTCATGGTCGAGGTTGAGGTGTTCTGCCCCAGGAGGCTACAACGTGCGCTCA CTTACACCGATGCAGAGATCGGGAACGAGGAGGTCGAGATCGGACTCGATGTCGGAATGAGCCTCCAGCTAGAACAGGAAACACCAACTTGGGGACGTTG A
AA sequence Show only first row Show all	>Lus10028727 pacid=23164479 polypeptide=Lus10028727 locus=Lus10028727.g ID=Lus10028727.BGIv1.0 annot-version=v1.0 MKAKAKKQQQESSPADDSASVKSRSSKQNPELFWPRLVVRKWLNIAAKESDYSADTESDCDSSSSDGSGESDSEEISPLGKQTRFREDDNPHVDDALPFL HRRRKSETFRAQYISPKELRIRVATWNVGGKVPPDDLDIDGWVDTDEPADIFVLGLQEIVPLNAGNIFGAEDNRPATKWENIIRDTLNSIRPVRTKVKCY SDPVSPSKFNPSDEVPGAVEEILLESDSDIGEEVHPIDEDPIDFAEIKDRPEAYPFDVLLDSNLRHITIPEESDFQRQASQKSLNRLNCIRNDDNASEDM DESGVTPQARKLTRMLSGSERIGLSWPEPQLNLLSGHVLQRPGSFKSIKSLSATKSFERYSSFKSVANDMQTGIALLTEIDLESLLKRKRSSYVRIVSKQ MVGIFITVWVRRHLRKHIQNVKVSTVGVGVMGYIGNKGSVSVSMSVYQTPFCFVCTHLTSGEKEGDELKRNADIREIHKRTNFRSVAAVGLPKTIKDHER IIWLGDLNYRINLSYERTRELIAHKQLSTLAEYDQLTREFRKGRVFDGWREGKLTFLPTYKYEFNSTRYCGEDPKAAGRRTPAWCDRILSHGKGFKLLSY RRTELKFSDHRPVTATFMVEVEVFCPRRLQRALTYTDAEIGNEEVEIGLDVGMSLQLEQETPTWGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71710			DNAse I-like superfamily prote...		Lus10028727 [exp]	0	1
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10029494 [exp]	7.1	0.8576
AT5G56040			Leucine-rich receptor-like pro...		Lus10032954 [exp]	10.6	0.8931
AT5G62620			Galactosyltransferase family p...		Lus10042164 [exp]	15.6	0.8901
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Lus10015038 [exp]	20.8	0.8688
AT4G23740			Leucine-rich repeat protein ki...		Lus10027568 [exp]	23.0	0.8899
AT2G37195			unknown protein		Lus10019937 [exp]	27.5	0.8562
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10002272 [exp]	29.9	0.8391
AT5G19200		TSC10B	TSC10B, NAD(P)-binding Rossman...		Lus10010510 [exp]	31.3	0.8761
AT4G33590			unknown protein		Lus10041131 [exp]	31.5	0.8836
AT4G13620	AP2_ERF		Integrase-type DNA-binding sup...		Lus10007124 [exp]	32.3	0.8777

Compare expression of checked genes

Lus10028727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.