Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09760 469 / 1e-166 Protein kinase superfamily protein (.1.2.3) AT1G74320 457 / 6e-162 Protein kinase superfamily protein (.1) AT1G71697 452 / 3e-160 ATCK1 choline kinase 1 (.1) AT2G26830 182 / 4e-54 EMB1187 embryo defective 1187, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028696 [exp] 733 / 0 AT4G09760 464 / 8e-165 Protein kinase superfamily protein (.1.2.3) Lus10026145 [exp] 448 / 9e-156 AT1G74320 499 / 6e-176 Protein kinase superfamily protein (.1) Lus10024127 [exp] 432 / 3e-150 AT1G74320 484 / 4e-171 Protein kinase superfamily protein (.1) Lus10005386 [exp] 382 / 4e-131 AT1G74320 426 / 1e-148 Protein kinase superfamily protein (.1) Lus10019424 [exp] 163 / 1e-44 AT2G26830 471 / 1e-161 embryo defective 1187, Protein kinase superfamily protein (.1) Lus10008675 [exp] 89 / 3e-20 AT1G74320 91 / 2e-22 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G197500 [exp] 529 / 0 AT4G09760 486 / 1e-172 Protein kinase superfamily protein (.1.2.3) Potri.002G063700 [exp] 523 / 0 AT4G09760 481 / 2e-171 Protein kinase superfamily protein (.1.2.3) Potri.003G193000 [exp] 479 / 1e-170 AT1G74320 523 / 0.0 Protein kinase superfamily protein (.1) Potri.001G032000 [exp] 477 / 1e-169 AT1G74320 531 / 0.0 Protein kinase superfamily protein (.1) Potri.006G120700 [exp] 177 / 5e-52 AT2G26830 524 / 0.0 embryo defective 1187, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01633 [flax] [poplar] Choline_kinase Choline/ethanolamine kinase CL0016 [flax] [poplar] PF04428 [flax] [poplar] Choline_kin_N Choline kinase N terminus
Representative CDS sequence Show only first row Show all	>Lus10028728 pacid=23164463 polypeptide=Lus10028728 locus=Lus10028728.g ID=Lus10028728.BGIv1.0 annot-version=v1.0 ATGGCAATCAAGACAAATGGGTTCATAGAGGGGATCTTCCCAGAAGAGCTGAAGAGGGTTCTGAAATCTCTAGCTGTGGAATGGGGAGATGTAGTTGAAG ATATGAAAGCTCTGCAGGTGATACCGATGAAAGGAGCGATGACTAATGAGGTTTATCAGATAAACTGGCCCAGAAAGGAAGAAGGATTGTTCAACAGGAA GGTTCTGATCAGGATCTATGGTGAAGGGGTTGACTTGTTCTTCAATAGGGACGTTGAAGTTGAGACCTTTGAGTGCATGTCTAACCATGGCCAAGGTCCT AGGCTTCTTGGCCGGTTCCCTGAAGGGAGGGTTGAAGAGTTCATCCATGCTAGGACTCTTTCAGCTGGTGATCTTAGGGACCCTGAGATTTCAGCTCTGA TAGCAGCTAAGATGAGGGAGTTTCATAACCTTGACATGCCTGGTCCAAGAACTGTCACACTTTGGAATAGAATGAGGGACTGGTTGCCTGAAGCTAAAAG GTTATGCACTGCGAAAGATGCAAAGGAGTTCAAGCTCGATGTGATCAAAGACGAGATTGATATACTGGAGACGGCGATGTCGAAAAGCTGCTGCCAAGAT ATCGCATTCTGTCACAATGATTTGCAGTATGGTAACATAATGATGGATGAAGAGACCAGAGCTATCACCTTGATTGATTACGAGTATGCGAGCTACAACC CTGTTGCTTACGACTTGGCGAACCACTTCAGTGAAATGGCTGCCGATTACCATTCCGACACTCCACATGTTCTTGACTATAGCAAATACCCAGGACTCGA GGAGCGATGCAGATTCATCCGCGCTTACCTCGATGAGCCAACCGAGGAGGAAGTGATGCAGCTAGCTGAGTGTGTGGAGAAGTACACCCTTGCCAACCAT CTTTTCTGGGGCTTATGGGGCATAATCTCGAGGTATGTGAACCAGATCGACTTCGACTACTTGGAGTATGCGAGGCAGAGGTTCAACCAGTACTGGTTGA GGAAGCCGGAGATTCTGGGTTCATCAGAAGTGAAGAACTGTTCATGTGGGAATGGAATTGGAAAGGGGGAAGGAGCTTGA
AA sequence Show only first row Show all	>Lus10028728 pacid=23164463 polypeptide=Lus10028728 locus=Lus10028728.g ID=Lus10028728.BGIv1.0 annot-version=v1.0 MAIKTNGFIEGIFPEELKRVLKSLAVEWGDVVEDMKALQVIPMKGAMTNEVYQINWPRKEEGLFNRKVLIRIYGEGVDLFFNRDVEVETFECMSNHGQGP RLLGRFPEGRVEEFIHARTLSAGDLRDPEISALIAAKMREFHNLDMPGPRTVTLWNRMRDWLPEAKRLCTAKDAKEFKLDVIKDEIDILETAMSKSCCQD IAFCHNDLQYGNIMMDEETRAITLIDYEYASYNPVAYDLANHFSEMAADYHSDTPHVLDYSKYPGLEERCRFIRAYLDEPTEEEVMQLAECVEKYTLANH LFWGLWGIISRYVNQIDFDYLEYARQRFNQYWLRKPEILGSSEVKNCSCGNGIGKGEGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09760			Protein kinase superfamily pro...		Lus10028728 [exp]	0	1
AT4G09760			Protein kinase superfamily pro...		Lus10028696 [exp]	1.0	0.9239
AT1G43670		FINS1, AtcFBP	FRUCTOSE INSENSITIVE 1, Arabid...		Lus10018885 [exp]	3.0	0.8636
AT3G19290	bZIP	AREB2, ABF4	ABA-RESPONSIVE ELEMENT BINDING...		Lus10002399 [exp]	3.5	0.8344
AT3G12660		FLA14	FASCICLIN-like arabinogalactan...		Lus10026107 [exp]	3.7	0.8709
AT1G48300			unknown protein		Lus10009975 [exp]	4.9	0.8258
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10037374 [exp]	7.2	0.8006
AT5G36228			nucleic acid binding;zinc ion ...		Lus10010788 [exp]	7.8	0.7615
AT2G28305		ATLOG1	LONELY GUY 1, Putative lysine ...		Lus10021462 [exp]	8.4	0.8293
AT3G63060		EDL3	EID1-like 3 (.1)		Lus10028001 [exp]	9.8	0.8015
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Lus10011523 [exp]	10.0	0.8230

Compare expression of checked genes

Lus10028728 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.