Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19940 44 / 3e-05 Major facilitator superfamily protein (.1) AT1G50310 40 / 0.0006 ATSTP9 sugar transporter 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012766 [exp] 119 / 3e-34 AT4G21480 50 / 2e-07 sugar transporter protein 12 (.1) Lus10012596 [exp] 43 / 3e-05 AT1G11260 65 / 2e-12 sugar transporter 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G101950 [exp] 42 / 0.0002 AT1G11260 625 / 0.0 sugar transporter 1 (.1) Potri.004G101900 [exp] 42 / 0.0002 AT1G11260 625 / 0.0 sugar transporter 1 (.1) Potri.004G109765 [exp] 40 / 0.0004 AT1G11260 630 / 0.0 sugar transporter 1 (.1) Potri.004G110630 [exp] 40 / 0.0005 AT1G11260 629 / 0.0 sugar transporter 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028729 pacid=23164576 polypeptide=Lus10028729 locus=Lus10028729.g ID=Lus10028729.BGIv1.0 annot-version=v1.0 ATGGCAGGACGCGTCGTCTTTGGCATTGGAGTAGGCTTCTCCGTCCAGTCCACGCAAGCCTACGCAGCTCGGCACCCATCCCTTTCTTATCCCATGATCA AACGAGTTTTACCTTTCTCCATAGCACACGGCATGTATATGGCCCATAGAGGAACGTTAAGTCAGGGGCCGTGGCGCATCAGTCTAGGAGTAGCGTGCGT CTACCCCGCATCCGCCATCGTGGACCTTCTCTTCATCATCGGCCTTCCCAACGTATCAGAAGAGGCACTCGCAGAAGAGGAAGATGAGTCTGCAGATATT GAAGCCGCTGCCAGCGTGGCAACCGGGTTAGCAACAACATGCCCCAACATCATCAAGTCAGGTCATCTAGTGGCGGTGCTAGCAGTTCTGTTGTTAATGA AGAAGTTGACCGGAGTCAACCTTGTGTTGATGTTTTACGCTCCGGTGCTTTTCCAAACCATCGTCGCGGGCTGCAACTCCTTCGTTTTCTCTGTCGTCGC CATGGAGCTTGGTTTTCGATTGATATCTTATTGGCTTTCATCTCATTAA
AA sequence Show only first row Show all	>Lus10028729 pacid=23164576 polypeptide=Lus10028729 locus=Lus10028729.g ID=Lus10028729.BGIv1.0 annot-version=v1.0 MAGRVVFGIGVGFSVQSTQAYAARHPSLSYPMIKRVLPFSIAHGMYMAHRGTLSQGPWRISLGVACVYPASAIVDLLFIIGLPNVSEEALAEEEDESADI EAAASVATGLATTCPNIIKSGHLVAVLAVLLLMKKLTGVNLVLMFYAPVLFQTIVAGCNSFVFSVVAMELGFRLISYWLSSH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19940			Major facilitator superfamily ...		Lus10028729 [exp]	0	1
AT3G25280			Major facilitator superfamily ...		Lus10025881 [exp]	1.7	0.8693
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10019645 [exp]	3.2	0.8372
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10019675 [exp]	3.7	0.8895
AT3G63095			Tetratricopeptide repeat (TPR)...		Lus10028014 [exp]	8.2	0.7206
					Lus10042011 [exp]	11.3	0.8710
AT1G61800		ATGPT2, GPT2	ARABIDOPSIS GLUCOSE-6-PHOSPHAT...		Lus10007653 [exp]	12.3	0.8512
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Lus10042012 [exp]	13.0	0.8194
AT1G53708		RTFL9	ROTUNDIFOLIA like 9 (.1)		Lus10041259 [exp]	16.6	0.7029
AT1G49000			unknown protein		Lus10032453 [exp]	17.5	0.8488
AT3G20750	GATA	GATA29	GATA transcription factor 29 (...		Lus10042504 [exp]	17.7	0.7648

Compare expression of checked genes

Lus10028729 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.