Plant FIBer expression Database

Lus10028730 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71696 601 / 0 SOL1.4, SOL1.3, SOL1.2, S SUPPRESSOR OF LLP1 1, carboxypeptidase D, putative (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028694
[exp]
786 / 0 AT1G71696 554 / 0.0 SUPPRESSOR OF LLP1 1, carboxypeptidase D, putative (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G197000
[exp]
664 / 0 AT1G71696 635 / 0.0 SUPPRESSOR OF LLP1 1, carboxypeptidase D, putative (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0035 Peptidase_MH PF00246 Peptidase_M14 Zinc carboxypeptidase
Representative CDS sequence
>Lus10028730 pacid=23164447 polypeptide=Lus10028730 locus=Lus10028730.g ID=Lus10028730.BGIv1.0 annot-version=v1.0
ATGAAGAAGCTCCTCGTCTCTCTTCAGTTCTTCTTCCTCCTCGCCGCCCTCCCCGCCGCCGTCTTAGGCAGAGGCGGCGAACGCCGTGGAAATCTCTCAG
GTCCAGCTCAATTCGCTCTGACTAGTGAGAAACTGATTATGAATGGAAATGGACAATTATGCATTACTGGGTCTGCTCTGACTAGGTCTGAGAATTATAG
GAGCAATGTGGCTAGTGGGAGGGTATTGCTTGAAGATGAGAAGGCTCAGAAACAGAAAATGGCGAAAAGAGCTCGTGGTTACATGACGAACATGGAGCTT
GAGAAAGCGGTGAAGGATTTTGGGGAAAGATGTAGCAACATTTCTAGGATATATAGTATTGGAGAGAGTGTGAATGGAGTTCCACTGTGGGTAATAGAAA
TTTCGGACAAGCCCGGGGAAGAAGAGGCTGAACCTGCATTCAAGTACATTGGAAATGTTCACGGGGATGAACCTGTTGGACGTGAACTTCTGATTCGTTT
AGCTAACTGGATATGCGACAACCATGTGAAGGATCCCCTGGCAAGATCAATTGTGGAAAATATTCACCTGCATATTCTCCCAGCAATAAATCCTGATGGT
TTTGCATTACAGAGACGTGGTAATGCGAAAAATATTGATCTGAATCGTGACTTTCCTGACCAGTTCTTTCCTTTGAATGATGATTTACTTGCACGTCAAC
CTGAAACTACAGCAGTCATGAAATGGTTGGGAGACATACATTTCACAAGTTCTGCAACTTTGCATGGGGGTGCACTTGTTGCAAATTATCCATGGGATGG
TACCACTGATGGAAGGAGACATTATTATTCATGCCCTGATGATGATACGTTCCGGTACCTGGCGAGCACTTACAGTCAGTCTCACTGCAACATGTCTTTG
AGCACCGAGTTCCCAGGGGGCATAACAAATGGAGCATTTTGGTATCCGATATATGGTGCAATGCAAGACTGGAACTACATACATGCTGGATGTTTCGAGT
TGACCTTGGAAGTCAGCAATGATAAATGGCCTAGTATTGATGAGATTCCTACAATTTGGGAGTACAACAGAATGAGTTTACTGAACCTTGCAGCTTCAGT
TTTGAAGACAGGAGTGCATGGAAGGATATTTGCATCAGATACCAGAACTCCTCTGCCTGGATTTATCACAATCAAGGGAATAAACTACACGGTTAAAGCT
AGCAGCGCCTTCGGAGATTATCATCGCCTGCTTGTGCCAGGAGAGAGATTCGAAGTTATTGCCAGTATGCCGGGGTACAAGACAAAGACAACAACCATAT
CACTAGGAGAGGCAGCCATGACTGCTGATTTCATCCTGGATCCAGAGGTTGCGACCGGACATTACTTACAGAGAATGTATAGTAGCTGCGATTGCAGTGG
GAGCAGTAGAAAGTTCAGCCTTGAAATGTTTTGGACACTGCACCTCGAGGTTTATGTAGTGGTAATCATATTTTTCCTCTGGTTTCTGTTAAGGCGGAGA
ATGAAATTGAGCCTCTTGATCGACAAGCAAGCTGCAAGAAGTTCACTTCCTGCCTGA
AA sequence
>Lus10028730 pacid=23164447 polypeptide=Lus10028730 locus=Lus10028730.g ID=Lus10028730.BGIv1.0 annot-version=v1.0
MKKLLVSLQFFFLLAALPAAVLGRGGERRGNLSGPAQFALTSEKLIMNGNGQLCITGSALTRSENYRSNVASGRVLLEDEKAQKQKMAKRARGYMTNMEL
EKAVKDFGERCSNISRIYSIGESVNGVPLWVIEISDKPGEEEAEPAFKYIGNVHGDEPVGRELLIRLANWICDNHVKDPLARSIVENIHLHILPAINPDG
FALQRRGNAKNIDLNRDFPDQFFPLNDDLLARQPETTAVMKWLGDIHFTSSATLHGGALVANYPWDGTTDGRRHYYSCPDDDTFRYLASTYSQSHCNMSL
STEFPGGITNGAFWYPIYGAMQDWNYIHAGCFELTLEVSNDKWPSIDEIPTIWEYNRMSLLNLAASVLKTGVHGRIFASDTRTPLPGFITIKGINYTVKA
SSAFGDYHRLLVPGERFEVIASMPGYKTKTTTISLGEAAMTADFILDPEVATGHYLQRMYSSCDCSGSSRKFSLEMFWTLHLEVYVVVIIFFLWFLLRRR
MKLSLLIDKQAARSSLPA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G71696 SOL1.4, SOL1.3,... SUPPRESSOR OF LLP1 1, carboxyp... Lus10028730
[exp]
0 1
AT1G27700 Syntaxin/t-SNARE family protei... Lus10007766
[exp]
4.9 0.8464
AT1G27700 Syntaxin/t-SNARE family protei... Lus10018703
[exp]
12.7 0.8186
Lus10007301
[exp]
15.6 0.8302
AT5G05140 Transcription elongation facto... Lus10027295
[exp]
28.8 0.8437
AT2G43210 Ubiquitin-like superfamily pro... Lus10026718
[exp]
33.0 0.8361
AT1G36050 Endoplasmic reticulum vesicle ... Lus10041121
[exp]
35.6 0.8359
AT5G54310 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.... Lus10037882
[exp]
37.3 0.8074
AT2G31130 unknown protein Lus10000990
[exp]
50.4 0.8084
AT1G52740 HTA9 histone H2A protein 9 (.1) Lus10043301
[exp]
50.8 0.8133
AT4G34370 ATARI1 ARABIDOPSIS ARIADNE 1, ARIADNE... Lus10011309
[exp]
53.4 0.8160

Lus10028730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.