Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22770 1349 / 0 FB, GI gigantea protein (GI) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028693 [exp] 1399 / 0 AT1G22770 1562 / 0.0 gigantea protein (GI) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G196700 [exp] 1560 / 0 AT1G22770 1609 / 0.0 gigantea protein (GI) (.1) Potri.002G064400 [exp] 962 / 0 AT1G22770 1626 / 0.0 gigantea protein (GI) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028731 pacid=23164629 polypeptide=Lus10028731 locus=Lus10028731.g ID=Lus10028731.BGIv1.0 annot-version=v1.0 ATGGCTGTTGCTACTTCTTCTGAGAGATGGATTGATGGCCTTCAGTTCTCTTCATTGTTCTGGCCTCCACCACAGGATGTTCAACAGAGAAAGGCACAAG TTACTGCTTACGTAGAGTATTTCGGGCAGTTCACCTCAGATCAGTTTCCTGATGATATAGCTGAGTTGATCCGAAGTCGTTATCCTTCACTGGAAAAACG CCTCTTTGATGATGTTCTCGCCACATTTGTCCTACATCATCCGGAGCACGGTCATGCAGTTGTGCTTCCGATTATTTCATCGTTGATCGACGGTGGACTG GTTTACGATAAGAGCTATCCTCCGTTCGCTTCTTTCATTTCTCTTGTCTGCCCGAGTAGTGAGAATGAGTATTCCGAACAATGGGCTCTAGCGTGTGGCG AGATCTTACGAATTTTGACTCATTACAATCGGCCGATTTACAAGAAGCATACCGCGGAGCCTGATCGAAGCAGTAGTGGCAGTCATGCAACCACTAGTCA GTCAACGAAGACCGGAGAATCATCAAGCAGTAGTCCCCCACCGGTGGAAAGGAAACCGTTAAGGCCTTTGTCTCCCTGGATTACTGATATATTGCTTGCT GCACCGCTCGGTATAAGAAGTGACTACTTCCGCTGGTGCAGTGGTGTCATGGGTAAATATGCAGCTGGAGAGCTCAAGCCACCAATCACTGCTGCTTCTC GTGGATCTGGAAAGCATCCTCAGCTCATGCCATCAACTCCAAGGTGGGCTGTCGCCAATGGTGCCGGTGTCATATTAAGCGTCTGTGACGAAGAAGTCGC TCGATACGAGACTGCAACGTTAACCGCAGCTGCTGTCCCTGCTCTTTTACTCCCTCCACCAACTACATCGTTAGACGAACATTTGGTTGCTGGACTGCCA GCTTTGGAGCCATATGCCCGCTTGTTTCACAGGTATTATGCCATCGCGACACCAAGTGCTACCCAAAGACTACTACTTGGACTCTTAGAAGCACCGCCTT CATGGGCTCCCGATGCACTTGATGCTGCTGTACAGCTTGTGGAACTCCTCCGAGCAGCTGAAGATTATGCGAATGGCATCCGACTGCCCAGGAACTGGAT GCATTTGCATTTCTTGCGGGCAATCGGAACTGCAATGTCCATGGGACCAGGTATAGCTGCTGATGCCGCTGCTGCTCTACTCTTTCGCATTCTATCACAG CCTGCATTGCTCCTTCCACCACTACGCCAAGTTGATTGCATCGATGCTTTGTGCACACGGTCCCGAGGTTCGTCACTCGTCGATCTTCCAGAAATCATCG TTGCAGCTCCATTGCAGCCTCCGACGCTGTCATGGAACTTGTACATACCTCTCCTTAAGGTTCTGGAATACCTTCCTCGTGGAAGCCCCTCGGAGGCATG TCTGATGAAGATATTCGTTGCTACTGTTGAAGCAATTCTTCAGAGGACATTTCCACCGGAGTCTTCGGCTGAACAAGTGAGACGGACGAGTTCACCATAC GTCATGGGGTCTGCCTCGAAAAACCTTGCAGTAGCGGAGCTTCGTACAATGGTGCATTCGCTGTTTCTAGAATCTTGTGCCAAGCCGGAGCTTGCTTCGC GTTTGCTCTTCGTCGTGCTTACTGTCTGTGTGAGTCATGAAGCTCAGTCAAATGGGAACAAGAGACGAAGAGGCGAAACGAGCCGGCGCAGGGACGAGAG AACCGCCGAGGATTTGGTTCAAGGCGATTCGAAACCGAAAAAGACGAAGAAGCAAGGTCCGGTCGCAGCGTTCGATTCTTACGTTCTTGCGGCTGTGTGT GCTCTTGCTTGTGAGCTTCAGTTGTTCCCTTTCATTTCGAGGGGTGCTAATCTGTCGTCTCATTCCAAAGACGCAAACGGAGCCAAACCTGCAAAGATGA ATGGATCCATGGGTGATTTTCGGAGTAGCATTGATTCAGCGATCAATCATACACGCAGGCTCCTCGCGATTCTGGAAGCACTGTTCTCACTGAAGCCATC ATCCATAGGGACATCGTGGGGCTATAGTTCGAATGAGATAGTAGCTGCAGCCATGGTTGCTGCTCACGTCTCCGAACTGTTCCGAAGGTCGAAAGCTTGC ATGCACGCTCTTTCCGTCTTCATTCGTTGCAAGTGGGATAACGAGATTTACAGCCGAGGCTCTTCGCTATACAACCTTATCGACATTCATAGTAAAGCCG TCGCGTCGATAGTCAACAAGGCTGAGCCTTTGGAAGTGCATTTCACTCCACCGATTCGGAACGATTCACTCGAAGGCAAAAGGCAAAACCGAAACGGAAC CGGTGGTAGCTTTGGATCAGGACAATCATCTGCTGAGCAATCTGGGGATTCGTCCTCGTCATCTTTACTCGAGATCAAACTGAAATGCGAAAAAGGCTCG AATCTGGAATCGAGCTCCGGGAAATTGGGGAAGGGAATTGCTAGCTTCTCATTAGAAGCTTCGGATTTGGCCAACTTCTTGACCAAGGATAGGCACATTG GATTCAGTTGCAGCGCGCAAGTTCTGCTGAGATCCGTTCTCGAGGAGAAACAAGAGCTTTGCTTTTCGGTCGTTTTCCTGCTTTGGCATAAATTGATTGC AGCTCCTGATACTCAGCCTAGTGCTGAAAGCACTTCTGCCCAACAAGGATGGAGACAGGTGGTTGATGCAATGTGCAACGTCGTTTCAGCTTCGCCAGCG AAAGCAGCTACCGCAGTCGTTCTTCAGGCGGATAGGGAGTTGCAACCTTGGATTGCTAAAGATGATGATCAAAGTCAGAAGATATGGAGAATCAATCAGC GGATAGTAAAGCTGATTGTCGAGCTTATGCGAAACCACGACACCCCTGAGTCATTGGTCATACTAGCAAGTGCCTCGGATCTACTGCTACGTGCTACGGA TGGAATGCTTGTCGATGGGGAAGCTTGCACTTTGCCCCAACTAGAGTTGCTAGAAGCAACAGCTAGAGCTGTTCGGCCGGTGGTGAACTGGGGAGAAACC GGATTCGCTATTGCTGATGGCCTTTCCAATCTACTTAAGTGTCGTTTACCAGCCACCGTTCGATGCCTTTCTCATCCAAGCGCTCACGTCCGAGCTCTGA GCCTGTCGGTGCTGCGAGACATCCTCCACAACGCGTCGATAAAAACCGCTCACAAGCAAGTGGACAAGAATGGAACCAACGGCCGATCCTCGTACCAGTA CTTTAATGTGGACGTGATCGACTGGCAAGCCGACATCGAGAAGTGCTTGGCGTGGGAAGCTCACAGCCAGCTGGCAAGAGGAACCCCCATCGACTTCCTC GACACAGCTGCCAGGGAACTAGGCTGCACCATCTCCGTCTGA
AA sequence Show only first row Show all	>Lus10028731 pacid=23164629 polypeptide=Lus10028731 locus=Lus10028731.g ID=Lus10028731.BGIv1.0 annot-version=v1.0 MAVATSSERWIDGLQFSSLFWPPPQDVQQRKAQVTAYVEYFGQFTSDQFPDDIAELIRSRYPSLEKRLFDDVLATFVLHHPEHGHAVVLPIISSLIDGGL VYDKSYPPFASFISLVCPSSENEYSEQWALACGEILRILTHYNRPIYKKHTAEPDRSSSGSHATTSQSTKTGESSSSSPPPVERKPLRPLSPWITDILLA APLGIRSDYFRWCSGVMGKYAAGELKPPITAASRGSGKHPQLMPSTPRWAVANGAGVILSVCDEEVARYETATLTAAAVPALLLPPPTTSLDEHLVAGLP ALEPYARLFHRYYAIATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEDYANGIRLPRNWMHLHFLRAIGTAMSMGPGIAADAAAALLFRILSQ PALLLPPLRQVDCIDALCTRSRGSSLVDLPEIIVAAPLQPPTLSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVEAILQRTFPPESSAEQVRRTSSPY VMGSASKNLAVAELRTMVHSLFLESCAKPELASRLLFVVLTVCVSHEAQSNGNKRRRGETSRRRDERTAEDLVQGDSKPKKTKKQGPVAAFDSYVLAAVC ALACELQLFPFISRGANLSSHSKDANGAKPAKMNGSMGDFRSSIDSAINHTRRLLAILEALFSLKPSSIGTSWGYSSNEIVAAAMVAAHVSELFRRSKAC MHALSVFIRCKWDNEIYSRGSSLYNLIDIHSKAVASIVNKAEPLEVHFTPPIRNDSLEGKRQNRNGTGGSFGSGQSSAEQSGDSSSSSLLEIKLKCEKGS NLESSSGKLGKGIASFSLEASDLANFLTKDRHIGFSCSAQVLLRSVLEEKQELCFSVVFLLWHKLIAAPDTQPSAESTSAQQGWRQVVDAMCNVVSASPA KAATAVVLQADRELQPWIAKDDDQSQKIWRINQRIVKLIVELMRNHDTPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAVRPVVNWGET GFAIADGLSNLLKCRLPATVRCLSHPSAHVRALSLSVLRDILHNASIKTAHKQVDKNGTNGRSSYQYFNVDVIDWQADIEKCLAWEAHSQLARGTPIDFL DTAARELGCTISV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Lus10028731 [exp]	0	1
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10024645 [exp]	1.0	0.8342
AT2G47390			Prolyl oligopeptidase family p...		Lus10010007 [exp]	1.7	0.8151
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Lus10028693 [exp]	3.2	0.8200
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Lus10017823 [exp]	4.0	0.8067
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031203 [exp]	8.7	0.8012
AT3G01100		ATHYP1, HYP1	ARABIDOPSIS THALIANA HYPOTHETI...		Lus10005223 [exp]	9.2	0.7753
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10030757 [exp]	11.3	0.7591
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10036149 [exp]	13.9	0.7783
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10013237 [exp]	14.7	0.7580
AT5G47040		LON2	lon protease 2 (.1)		Lus10011038 [exp]	15.5	0.7068

Compare expression of checked genes

Lus10028731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.