Plant FIBer expression Database

Lus10028732 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G09830 184 / 2e-59 Uncharacterised conserved protein UCP009193 (.1)
AT5G64780 140 / 2e-42 Uncharacterised conserved protein UCP009193 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028692
[exp]
325 / 1e-114 AT4G09830 207 / 3e-68 Uncharacterised conserved protein UCP009193 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G196400
[exp]
233 / 2e-78 AT4G09830 220 / 2e-73 Uncharacterised conserved protein UCP009193 (.1)
Potri.002G064800
[exp]
231 / 1e-77 AT4G09830 231 / 1e-77 Uncharacterised conserved protein UCP009193 (.1)
Potri.001G003400
[exp]
89 / 1e-22 AT4G09830 99 / 1e-26 Uncharacterised conserved protein UCP009193 (.1)
PFAM info
Representative CDS sequence
>Lus10028732 pacid=23164536 polypeptide=Lus10028732 locus=Lus10028732.g ID=Lus10028732.BGIv1.0 annot-version=v1.0
ATGGGGAAGAAGAGGAAATCGGTGGCCTCGAGCTTGGACGAGGTGGATCGGACCATGTACACGACCTTCTGCAGCGCTGCAAGCTCGCTTTCACAGCTCT
ACACACAGGCGACCAACCACCAGAAACTTACCTTCCAAGCTGGAGAGCGCCACGGCCTTGAAAAGCTCCATCAGTGGATTCGACGACAGCAGGAGGCAGG
TTCAAGGGTCGCAACTGCCGATGTACTCAATTATATTCAGAACGAGATGGATTACACTGGAGAAGAGCAGCCATCAATGTCTCCAAGAGCACAACCCCAA
CCGATACAGTCTTTGAACTCTGGCTTCCCGGCTTCTGTTCTCTCATCCGGTTCATCTGGACCCACCGGCCTTAGCCAAGTCAGCCGAGCCTCCGACCATT
GCGATCACCAATCCAAGAACTCAGTATTCTCCAATGCCTTGTCCAGTCCCGTCCGTAGAAGCCTCCAGAACTACCACATTGCTCAAGGCGGCCTTTATCA
GGCTGGAGGAGGATCACCACCAGGAAATGGGACTCGTAACAACAACGATACGCATTCCAACACCCATTCTAACGATTCCTCCATGGACATCTAG
AA sequence
>Lus10028732 pacid=23164536 polypeptide=Lus10028732 locus=Lus10028732.g ID=Lus10028732.BGIv1.0 annot-version=v1.0
MGKKRKSVASSLDEVDRTMYTTFCSAASSLSQLYTQATNHQKLTFQAGERHGLEKLHQWIRRQQEAGSRVATADVLNYIQNEMDYTGEEQPSMSPRAQPQ
PIQSLNSGFPASVLSSGSSGPTGLSQVSRASDHCDHQSKNSVFSNALSSPVRRSLQNYHIAQGGLYQAGGGSPPGNGTRNNNDTHSNTHSNDSSMDI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G09830 Uncharacterised conserved prot... Lus10028732
[exp]
0 1
AT4G15470 Bax inhibitor-1 family protein... Lus10041240
[exp]
1.0 0.8992
AT4G01575 serine protease inhibitor, Kaz... Lus10030166
[exp]
2.0 0.8259
AT5G64813 LIP1 Light Insensitive Period1, Ras... Lus10005795
[exp]
3.0 0.8165
AT1G28960 ATNUDX15, ATNUD... ARABIDOPSIS THALIANA NUDIX HYD... Lus10015301
[exp]
5.9 0.8001
AT1G02130 ARA5, AtRABD2a,... ARABIDOPSIS THALIANA RAB D2A, ... Lus10037608
[exp]
6.6 0.8048
AT5G47200 AtRABD2b, AtRab... ARABIDOPSIS RAB GTPASE HOMOLOG... Lus10000595
[exp]
8.9 0.7644
AT4G29350 PRF2, PFN2, PRO... profilin 2 (.1) Lus10012936
[exp]
16.7 0.7662
AT2G02010 GAD4 glutamate decarboxylase 4 (.1) Lus10035096
[exp]
19.7 0.7176
AT5G23530 ATCXE18 carboxyesterase 18 (.1) Lus10029541
[exp]
20.1 0.7589
Lus10039510
[exp]
20.5 0.6348

Lus10028732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.