Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22790 95 / 4e-24 unknown protein AT1G34010 48 / 7e-07 unknown protein AT1G55475 42 / 5e-05 unknown protein AT3G13480 40 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028691 [exp] 215 / 4e-71 AT1G22790 189 / 1e-60 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G196300 [exp] 149 / 2e-45 AT1G22790 183 / 1e-58 unknown protein Potri.002G064900 [exp] 145 / 5e-44 AT1G22790 188 / 2e-60 unknown protein Potri.008G170700 [exp] 38 / 0.0007 AT2G33390 77 / 8e-20 unknown protein Potri.010G067200 [exp] 37 / 0.001 AT2G33390 76 / 3e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028733 pacid=23164568 polypeptide=Lus10028733 locus=Lus10028733.g ID=Lus10028733.BGIv1.0 annot-version=v1.0 ATGTTATTTGCAGTGGAAGGAGGGGGATTCTTCTCTTCTTCAGCTTCTGGCTATAGTAAGGGCCTGTCCCTTCTCCTGCTGGGTCAGAAGCAAGAAGACA AACCCATGAGAGTTGCGCCGTGGAATCAGTACCAGTTGGTAGACCACGAACCGGACCCTGATCTCCAGCTGGCTTCCTTGAAGAACCGGGCTTCCCGTGG GTGCGCTGCTTCCTTTGCTTGTTTTGGTGGCGCCTCCACGGGAGTCGATCCCCCTTCACATCTTAAAGTAGGTCCTGCCACCCACCAGCAGGATGCATTG CCTGATACCCTTGTTGTTGATCACGAGGAGAAAGACATAACAACAACAACAACAACCGAGATCGTTGAAGATGATAAGAAATCGCTGAAAGCATCGCTCA GGAGCAGCTTGAAGAAGTCGTTAAATACTGTTCCTGCCCCGATACAGGATGCTAGGCACCGTACTGCTTTGAACGAGCAGGTTAGCAATGTCCCCGGACA TAACGATCGGCGGAAAGTACAGTGGACTGATGCTTGTGGCAGTGAGCTTACTGAAATCAGAGAATTTGAGCCAAGTTTGCGAGAGTCAGGATCTTCATAG
AA sequence Show only first row Show all	>Lus10028733 pacid=23164568 polypeptide=Lus10028733 locus=Lus10028733.g ID=Lus10028733.BGIv1.0 annot-version=v1.0 MLFAVEGGGFFSSSASGYSKGLSLLLLGQKQEDKPMRVAPWNQYQLVDHEPDPDLQLASLKNRASRGCAASFACFGGASTGVDPPSHLKVGPATHQQDAL PDTLVVDHEEKDITTTTTTEIVEDDKKSLKASLRSSLKKSLNTVPAPIQDARHRTALNEQVSNVPGHNDRRKVQWTDACGSELTEIREFEPSLRESGSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22790			unknown protein		Lus10028733 [exp]	0	1
AT1G09160			Protein phosphatase 2C family ...		Lus10020666 [exp]	2.2	0.7580
AT3G02900			unknown protein		Lus10009524 [exp]	3.2	0.7511
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040149 [exp]	7.3	0.7146
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10012056 [exp]	8.8	0.7113
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10007319 [exp]	11.7	0.6943
AT1G53210			sodium/calcium exchanger famil...		Lus10042848 [exp]	12.4	0.7193
AT2G05810			ARM repeat superfamily protein...		Lus10029996 [exp]	16.0	0.6831
AT5G47040		LON2	lon protease 2 (.1)		Lus10011038 [exp]	21.5	0.6839
AT3G62980		AtTIR1, TIR1	TRANSPORT INHIBITOR RESPONSE 1...		Lus10018425 [exp]	22.4	0.6897
AT4G30020			PA-domain containing subtilase...		Lus10001310 [exp]	28.9	0.7196

Compare expression of checked genes

Lus10028733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.