Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71695 444 / 8e-157 Peroxidase superfamily protein (.1) AT2G18150 258 / 6e-84 Peroxidase superfamily protein (.1) AT5G06730 258 / 6e-84 Peroxidase superfamily protein (.1) AT2G18140 256 / 4e-83 Peroxidase superfamily protein (.1) AT4G33420 252 / 6e-82 Peroxidase superfamily protein (.1) AT5G06720 251 / 3e-81 ATPA2 peroxidase 2 (.1) AT4G36430 251 / 4e-81 Peroxidase superfamily protein (.1) AT5G19890 244 / 7e-79 Peroxidase superfamily protein (.1) AT5G51890 244 / 1e-78 Peroxidase superfamily protein (.1) AT3G50990 243 / 4e-78 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028689 [exp] 519 / 0 AT1G71695 328 / 4e-114 Peroxidase superfamily protein (.1) Lus10032926 [exp] 264 / 2e-86 AT1G05260 292 / 5e-98 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10027989 [exp] 258 / 2e-83 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10010634 [exp] 256 / 4e-83 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10004163 [exp] 256 / 4e-83 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10041784 [exp] 252 / 1e-81 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10027163 [exp] 251 / 3e-81 AT4G11290 491 / 4e-176 Peroxidase superfamily protein (.1) Lus10039681 [exp] 250 / 8e-81 AT4G11290 488 / 3e-175 Peroxidase superfamily protein (.1) Lus10015555 [exp] 249 / 1e-80 AT2G41480 432 / 9e-153 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G065300 [exp] 488 / 3e-174 AT1G71695 468 / 2e-166 Peroxidase superfamily protein (.1) Potri.005G195600 [exp] 467 / 5e-166 AT1G71695 460 / 4e-163 Peroxidase superfamily protein (.1) Potri.005G195700 [exp] 449 / 8e-159 AT1G71695 453 / 2e-160 Peroxidase superfamily protein (.1) Potri.015G003500 [exp] 274 / 3e-90 AT1G05260 291 / 1e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.012G006800 [exp] 270 / 1e-88 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.015G003600 [exp] 261 / 3e-85 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.001G011500 [exp] 256 / 1e-83 AT5G06720 376 / 6e-131 peroxidase 2 (.1) Potri.019G063201 [exp] 255 / 4e-83 AT3G01190 412 / 4e-145 Peroxidase superfamily protein (.1) Potri.003G214800 [exp] 256 / 5e-83 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.011G027300 [exp] 255 / 7e-83 AT3G01190 407 / 2e-143 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10028735 pacid=23164544 polypeptide=Lus10028735 locus=Lus10028735.g ID=Lus10028735.BGIv1.0 annot-version=v1.0 ATGGCTCCCACTTCTTCCCATGTCGTCGCTCTAACGATCATGTTGTCGGCGGTGTTGTTCGCATCCACGGCGACGGCTCAGATTCCGGCGCCGGCGAAAG GAATGTCGTGGACTTTCTACAAGTCCTCCTGCCCCAAGCTCGAGTCCATCATCACTAAGCGCCTCAAGGAAGTGTTCAAGAAGGACATCGGCCAGGCCGC AGGCTTGCTCCGCCTCCACTTCCATGACTGCTTCGTCGAGGGATGTGATGGATCGGTGTTGCTGACTGGATCGGCAGGTGGGCCCAGCGCGGAGCAAGGG TCCCCACCTAACTTGAGCCTGAGGAAAGAAGCCTTCCGAATCATCGACGACCTCCGTGCACGTGTCCACAAGGAGTGCGGCCGCGTCGTCTCTTGCTCCG ACATTGTCGCTATAGCTGCCCGTGACTCCGTCGTCCTGTCTGGTGGGCCAAAGTACCAAGTGGCGTTAGGCCGCCGCGACGGTACAACGTTAGTAACACA AGACACCACCTTGGCCAACCTCCCGCCCCCGTTTGCCACTACGGGAACCATCCTGAGCTCCCTCGCCACCAAGAACCTCAACCCGACCGACGCGGTCGCA CTGTCTGGGGCCCACACCATCGGGATCAGCCACTGCTCCTCCTTCACCGACCGCCTCTACCCTAACCAGGATCCCTCCATGGACCAGACCTTCGCCAAAA ACCTCAAGGCCACGTGTCCTCAGGCTGCCACGACCGACAACATTGTCAACCAGGACATTCGGTCCCCGAACGTGTTCGACAACAAGTATTATGTTGACTT GATGAACCGACAGGGCCTCTTCACCTCCGACCAGGACTTATACACCGACTCGCGAACCCGTGGGATTGTTACAAGTTTCGCGATCAACCAGACCCTGTTT TTCGAGAAGTTTGTCGTGGCTATGATCAAGATGGGGCAGATAAGCGTGTTGACCGGTAAACAAGGGGAGATCAGAGCTAACTGTTCGCTAACGAACTCCG CGAAGGTACAAACGTCTTCGTTCTTGGAGGAAGCTGTGGAGGAGGCTGTCGAGCTTTTGGCTGGGATGAGATAA
AA sequence Show only first row Show all	>Lus10028735 pacid=23164544 polypeptide=Lus10028735 locus=Lus10028735.g ID=Lus10028735.BGIv1.0 annot-version=v1.0 MAPTSSHVVALTIMLSAVLFASTATAQIPAPAKGMSWTFYKSSCPKLESIITKRLKEVFKKDIGQAAGLLRLHFHDCFVEGCDGSVLLTGSAGGPSAEQG SPPNLSLRKEAFRIIDDLRARVHKECGRVVSCSDIVAIAARDSVVLSGGPKYQVALGRRDGTTLVTQDTTLANLPPPFATTGTILSSLATKNLNPTDAVA LSGAHTIGISHCSSFTDRLYPNQDPSMDQTFAKNLKATCPQAATTDNIVNQDIRSPNVFDNKYYVDLMNRQGLFTSDQDLYTDSRTRGIVTSFAINQTLF FEKFVVAMIKMGQISVLTGKQGEIRANCSLTNSAKVQTSSFLEEAVEEAVELLAGMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71695			Peroxidase superfamily protein...		Lus10028735 [exp]	0	1
AT1G71695			Peroxidase superfamily protein...		Lus10028689 [exp]	5.4	0.9740
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10005107 [exp]	10.2	0.9694
AT2G47710			Adenine nucleotide alpha hydro...		Lus10006701 [exp]	11.1	0.9673
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10029759 [exp]	11.4	0.9648
AT3G62550			Adenine nucleotide alpha hydro...		Lus10025033 [exp]	12.3	0.9194
AT5G39150			RmlC-like cupins superfamily p...		Lus10006536 [exp]	12.7	0.9691
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10027598 [exp]	18.0	0.9627
AT2G47710			Adenine nucleotide alpha hydro...		Lus10006703 [exp]	18.5	0.9405
AT3G19615			unknown protein		Lus10031599 [exp]	21.2	0.9590
AT2G47710			Adenine nucleotide alpha hydro...		Lus10007043 [exp]	23.6	0.9270

Compare expression of checked genes

Lus10028735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.