Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05260 266 / 5e-88 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT4G11290 265 / 2e-87 Peroxidase superfamily protein (.1) AT3G03670 261 / 4e-86 Peroxidase superfamily protein (.1) AT1G05250 261 / 5e-86 Peroxidase superfamily protein (.1) AT1G05240 261 / 5e-86 Peroxidase superfamily protein (.1) AT1G14550 257 / 1e-84 Peroxidase superfamily protein (.1) AT4G36430 257 / 2e-84 Peroxidase superfamily protein (.1) AT5G42180 256 / 4e-84 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT4G33420 255 / 7e-84 Peroxidase superfamily protein (.1) AT1G14540 254 / 1e-83 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028688 [exp] 578 / 0 AT4G11290 265 / 5e-87 Peroxidase superfamily protein (.1) Lus10038054 [exp] 374 / 4e-130 AT5G51890 264 / 7e-87 Peroxidase superfamily protein (.1) Lus10032926 [exp] 310 / 2e-105 AT1G05260 292 / 5e-98 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10009990 [exp] 281 / 6e-94 AT2G41480 233 / 2e-74 Peroxidase superfamily protein (.1) Lus10038055 [exp] 280 / 4e-93 AT2G41480 243 / 2e-78 Peroxidase superfamily protein (.1) Lus10031664 [exp] 273 / 8e-91 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1) Lus10027405 [exp] 266 / 3e-88 AT5G51890 448 / 2e-159 Peroxidase superfamily protein (.1) Lus10029543 [exp] 261 / 3e-86 AT4G33420 479 / 1e-171 Peroxidase superfamily protein (.1) Lus10018374 [exp] 261 / 6e-86 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G003600 [exp] 326 / 2e-111 AT1G05260 285 / 6e-95 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.015G003500 [exp] 317 / 5e-108 AT1G05260 291 / 1e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.012G006800 [exp] 309 / 8e-105 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 279 / 4e-93 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 278 / 2e-92 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 278 / 2e-92 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 278 / 2e-92 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 278 / 2e-92 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 277 / 2e-92 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.007G122100 [exp] 268 / 6e-89 AT1G05260 496 / 3e-178 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10028736 pacid=23164625 polypeptide=Lus10028736 locus=Lus10028736.g ID=Lus10028736.BGIv1.0 annot-version=v1.0 ATGGCCGAGGCTGCTCTGAAGCCAGGCTTCTACAAGTCATCGTGCCCATCGGCTGAATCCGTCGTCAAGAGGGTCGTGACCAGGGCCGTGTCTCGCGATT CAAACCTTGGAGCCGGACTCATTAGGATGCACTTCCACGACTGCTTTATCAGGGGATGTGACGCATCGGTCCTCCTGAAATCCTCCCCGGGAGGGAACCA AACCGAGAGAGACCATCCGGCCAACAACCCGAGCCTAAGAGGATTCGAGGTAATCGACTCGGCCAAATCGGAACTCGAATTAGTCTGCCCAAACACCGTC TCATGCGCCGACATTATCGCCTTTGCCGCTCGGGACAGCTCATTCATCCTCGGACGCATCAACTACGGCGTCCCCGCCGGTCGTCGCGATGGCCGCGTTT CGTCTTCCGACGATATCGGCGCTAACCTCCCGCCTCCGAGCTTCTCGGCGGAGCAATTGGCGCAAAATTTTGCCCGAAAGGGGTTGACCACGGAGGAGAT GGTGGTGCTCTCCGGTGCCCACTCGATCGGTGTGGCCCACTGCTCTTCATTCGCCAATCGGCTCTACTCATTCAATAGGACCCACCCGCAGGATCCGACG TTGGACTCCACGTACGCGACAGAGCTAAAGAGGCGATGCCCGAATGACGGAGGAAATGCGGCGGCGGACCTTGACTCGACACCAAACCGTCTAGACAATC GATACTTCGCTGATCTTAAGAGGCGGAGAGGGATTTTGAGCTCGGACCAGACACTTATGGATAGTACATTGACGAGGAATATAGCGATGAAGTTCGCTAG TGGGAACGGTGGCGCATGGGCCGGAAGGTACGCCAAGGCCATGGTGAAGATGGGGTCGATTGAGGTCCTTACGGGGAATAATGGGGAGATTAGGAAAATT TGTAGTGTCGTCAATTGA
AA sequence Show only first row Show all	>Lus10028736 pacid=23164625 polypeptide=Lus10028736 locus=Lus10028736.g ID=Lus10028736.BGIv1.0 annot-version=v1.0 MAEAALKPGFYKSSCPSAESVVKRVVTRAVSRDSNLGAGLIRMHFHDCFIRGCDASVLLKSSPGGNQTERDHPANNPSLRGFEVIDSAKSELELVCPNTV SCADIIAFAARDSSFILGRINYGVPAGRRDGRVSSSDDIGANLPPPSFSAEQLAQNFARKGLTTEEMVVLSGAHSIGVAHCSSFANRLYSFNRTHPQDPT LDSTYATELKRRCPNDGGNAAADLDSTPNRLDNRYFADLKRRRGILSSDQTLMDSTLTRNIAMKFASGNGGAWAGRYAKAMVKMGSIEVLTGNNGEIRKI CSVVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10028736 [exp]	0	1
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10029371 [exp]	1.7	0.8983
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10002893 [exp]	3.3	0.9088
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10004205 [exp]	4.9	0.9053
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10043468 [exp]	9.2	0.8660
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029331 [exp]	9.8	0.8726
AT5G14020			Endosomal targeting BRO1-like ...		Lus10035167 [exp]	10.6	0.8872
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Lus10034123 [exp]	13.0	0.8778
AT4G34770			SAUR-like auxin-responsive pro...		Lus10012183 [exp]	13.2	0.8807
AT4G39660		AGT2	alanine:glyoxylate aminotransf...		Lus10004480 [exp]	14.1	0.8702
AT2G26040		RCAR14, PYL2	regulatory components of ABA r...		Lus10024991 [exp]	19.9	0.8134

Compare expression of checked genes

Lus10028736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.