Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24630 528 / 0 DHHC-type zinc finger family protein (.1) AT5G50020 516 / 0 DHHC-type zinc finger family protein (.1.2) AT3G26935 408 / 4e-140 DHHC-type zinc finger family protein (.1) AT5G41060 369 / 2e-125 DHHC-type zinc finger family protein (.1.2) AT3G48760 354 / 2e-118 DHHC-type zinc finger family protein (.1) AT3G56930 337 / 6e-112 DHHC-type zinc finger family protein (.1.2) AT5G05070 301 / 2e-98 DHHC-type zinc finger family protein (.1) AT3G56920 286 / 1e-93 DHHC-type zinc finger family protein (.1) AT2G40990 286 / 6e-93 DHHC-type zinc finger family protein (.1) AT3G60800 88 / 4e-19 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028687 [exp] 744 / 0 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 417 / 1e-143 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10035177 [exp] 415 / 9e-143 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10033527 [exp] 407 / 6e-141 AT4G24630 415 / 1e-144 DHHC-type zinc finger family protein (.1) Lus10020844 [exp] 397 / 1e-136 AT5G50020 405 / 3e-140 DHHC-type zinc finger family protein (.1.2) Lus10016754 [exp] 360 / 1e-120 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10022451 [exp] 359 / 3e-120 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 330 / 4e-109 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10038990 [exp] 303 / 2e-99 AT5G05070 466 / 1e-163 DHHC-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G195300 [exp] 635 / 0 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G065500 [exp] 629 / 0 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.007G077000 [exp] 452 / 1e-158 AT4G24630 446 / 6e-157 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 403 / 5e-138 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 401 / 2e-137 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 381 / 1e-129 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 380 / 4e-129 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 379 / 2e-128 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 372 / 8e-126 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.016G025100 [exp] 345 / 2e-114 AT3G56930 497 / 3e-173 DHHC-type zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10028737 pacid=23164541 polypeptide=Lus10028737 locus=Lus10028737.g ID=Lus10028737.BGIv1.0 annot-version=v1.0 ATGGCGAAGCGCGTTTACGAAGTCTGGAAAGGAAGTAATAAGTTCATATTTGGAGGGAGATTCATATTCGGACCAGATGCTAAGTCATTAGTAGTCACCT TGTCGCTAATCATCATTCCCGTCACTATCTTTTGTGTATTCGTTGCAAGGCATCTTCGTCACGAATTGTCACCCTATAATGCAGGGTATGCTATTCTGGT GGTTGCAATAGCCTTCACCGTCTATGTATTGGCTCTTCTTTTTATTACATCAGCACGGGACCCCGGAATTCTACCTCGCAATTTGCATCCACCGGAAGAA GAGTTCCGTTACGAATCTTCAGCATCGGCCGAGGCTGGAGGGAGACAGACACCGAGCCTCCAGTTTCCCCGGACAAAGGAAGTGATGGTTAATGGAATTC CTGTTCGGGTGAAATACTGCGATACGTGTATGCTTTATCGTCCTCCCCGGTGCTCTCACTGTTCCATCTGCAACAATTGTGTTGAACGGTTCGACCATCA TTGTCCCTGGGTTGGTCAATGCATCGGACTGCGGAACTACCGATTCTTCTTCATGTTTGTTTCGTCTGCAACTCTTCTATGCATCTATGTGTTCTCCATA TCTGCCTTCTACATTAAGGTTCTGATGGATGAAAACCACGGCACGGTTTGGAAGGCGATGAAGGCCACGGTTTGGAAGGCAATGAAGGAATCTCCTGCTT CTGTCATACTAATGGCTTATTGTTTCATCTCTTTATGGTTTGTCGGAGGACTCACCGGGTTTCACTTATATCTCATCGGGACTAATCAGACAACCTATGA AAACTTCCGATACCGATCAGACAACAGGATCAACGTGTACAACCTAGGTTGTGTCACCAATTTTTCGGAAGTCTTTTGCACAGAGGTTAAGCCGTCCAAG AACAAATTCCGAGCATTTGTTCAAGAGGAAGTTCCACGACCCACACTGCCAACCACACGAGAAGAAGAAGGCAGAGGAGGAGAAGATTCCGGTGGTGGGG ATCCGCGTCCGAAGGTGGAAGATGATTTAGAGATCGGCGAGGACCTGTTGCAAATCTCCCAGCGTCGTAACGTGGAAGCAATCGACGAGGACATATGCAG CAGAGGGAGCAACGGGGGCCTTCCCCATAATACATCGGACGTGGATTCTGTGCTGAGCGCAGACCATCGAGCCCATGCCGTTAGAGGCGAGAATGCTAGG CATTCGAGTTGGGGACGGAGAAGCGGGAGCTGGGATATTTCGTCGGAAGTTACTGCTAACTCGAACGTGGCTGAAGCTAGAAGTTTAAGCTCGTTGAACG AAACACGGCAGCAATGA
AA sequence Show only first row Show all	>Lus10028737 pacid=23164541 polypeptide=Lus10028737 locus=Lus10028737.g ID=Lus10028737.BGIv1.0 annot-version=v1.0 MAKRVYEVWKGSNKFIFGGRFIFGPDAKSLVVTLSLIIIPVTIFCVFVARHLRHELSPYNAGYAILVVAIAFTVYVLALLFITSARDPGILPRNLHPPEE EFRYESSASAEAGGRQTPSLQFPRTKEVMVNGIPVRVKYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRFFFMFVSSATLLCIYVFSI SAFYIKVLMDENHGTVWKAMKATVWKAMKESPASVILMAYCFISLWFVGGLTGFHLYLIGTNQTTYENFRYRSDNRINVYNLGCVTNFSEVFCTEVKPSK NKFRAFVQEEVPRPTLPTTREEEGRGGEDSGGGDPRPKVEDDLEIGEDLLQISQRRNVEAIDEDICSRGSNGGLPHNTSDVDSVLSADHRAHAVRGENAR HSSWGRRSGSWDISSEVTANSNVAEARSLSSLNETRQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24630			DHHC-type zinc finger family p...		Lus10028737 [exp]	0	1
AT4G26430		CSN6B	COP9 signalosome subunit 6B (....		Lus10025606 [exp]	4.9	0.7849
AT1G80670		RAE1	RNA export factor 1, Transduci...		Lus10026095 [exp]	11.7	0.8071
AT3G56370			Leucine-rich repeat protein ki...		Lus10030526 [exp]	13.5	0.8160
AT2G01480			O-fucosyltransferase family pr...		Lus10003715 [exp]	15.4	0.7678
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Lus10028934 [exp]	25.1	0.7667
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Lus10025057 [exp]	29.3	0.7905
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10010472 [exp]	33.3	0.7724
AT5G22010		ATRFC1	replication factor C 1, replic...		Lus10013372 [exp]	35.1	0.7828
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10042211 [exp]	42.2	0.7699
AT3G25150			Nuclear transport factor 2 (NT...		Lus10003144 [exp]	48.5	0.7786

Compare expression of checked genes

Lus10028737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.