Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29670 241 / 2e-77 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 228 / 3e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45670 225 / 2e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G18970 225 / 3e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G15720 212 / 4e-66 GLIP7 GDSL-motif lipase 7 (.1) AT5G08460 209 / 1e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G33811 206 / 1e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 201 / 1e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 199 / 1e-60 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G37690 196 / 5e-60 SGNH hydrolase-type esterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028686 [exp] 617 / 0 AT1G29670 240 / 1e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041847 [exp] 244 / 2e-78 AT1G29670 459 / 2e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011996 [exp] 234 / 1e-74 AT1G29670 451 / 3e-159 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011998 [exp] 231 / 2e-73 AT1G29670 493 / 4e-176 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002775 [exp] 230 / 4e-73 AT1G29670 497 / 1e-177 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011997 [exp] 226 / 2e-71 AT5G45670 555 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016918 [exp] 219 / 2e-68 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10002777 [exp] 218 / 3e-68 AT5G45670 548 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 215 / 7e-67 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115900 [exp] 372 / 9e-129 AT1G29670 255 / 2e-82 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 233 / 4e-74 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 224 / 1e-70 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.018G008100 [exp] 223 / 3e-70 AT1G29670 345 / 8e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 214 / 4e-67 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076400 [exp] 214 / 4e-67 AT5G45670 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 211 / 5e-66 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.013G102500 [exp] 211 / 2e-65 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G102400 [exp] 206 / 8e-64 AT1G33811 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.003G213700 [exp] 204 / 4e-63 AT1G29670 344 / 3e-117 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10028738 pacid=23164481 polypeptide=Lus10028738 locus=Lus10028738.g ID=Lus10028738.BGIv1.0 annot-version=v1.0 ATGTTCGTCTTCGGCTCTTCCTTGGTTGACAATGGCAACAACGATTTTCTCGCCGGAGCTTTATCCCGGGCAAGGTACCCTCCCTACGGAGTCGATTTTC CGGCGGGAGCCACGGGTAGATACACGAACGGGAAGAATGTTGTCGATGTCTTCGCGGATAATCTCCATCTTACCCCTCCTCCGCCGTCGCGTTCCCCCGA AGCGGCCGGAGAGGAGATTCTCCATGGCGTGGATTTCGCCTCCGGGGCCTCGGGGATTCTGGACGATACCGGTTTAGTCACCGGTCAAGTGATACCTTTG AACCAACAAATCAGAGATTTCGAAGAGACCGTACTACCGAAACTCGAAAAGTATACCGGTTCTTCGGGCCAAGAGTTACTATCGAAATACCTAATTTTGG TTGGAGTTGGTGGCAACGATTACACTCTCAATTACTTCCTCAATCTAACCAACCCAAGACCAAGCCTTGAAGACTTCACTTCCAACCTCATTTCCACTTT GTCAGCAAAAATTCAGCATCTTCAGAGTTTAGGAGCTCGAAAGTTCGTGTTGATGTCGCTCTACCCACTAGGATGCAGCCCCACAGTCCTGGTCAGGAAC CCAGCAACCGGCACGACCACCTGCTCTCAGCCATTGAACCAAGCGGCTCAGCTGTTCAACTCGAAGCTGAAAACTACGGTGGATCAGTTGAACAAAATGC TACCCTGTTCGAAGTTTGTGCTCGTCAATTCCTATGGCATCATCAACGGGATCCTCAGTAACCCTAGCTTAGCAGGATTCCGGGATACGAGCAATTCGTG CTGCGAAGTGATTACGATACTGTGTAGCCGAGGTGGGAAAGTATGTGAAGATCGGAAGGGCTATGTGTACTTCGACGGTCTCCATCCGACAGAAGCAGTG AATGTTCAGTTAGCAAACAAGGCGTACGATTCGAGCAGCACCGACGATGTTTACCCTATCAATGTCAAGCAGTTGGTTGGACTGTAG
AA sequence Show only first row Show all	>Lus10028738 pacid=23164481 polypeptide=Lus10028738 locus=Lus10028738.g ID=Lus10028738.BGIv1.0 annot-version=v1.0 MFVFGSSLVDNGNNDFLAGALSRARYPPYGVDFPAGATGRYTNGKNVVDVFADNLHLTPPPPSRSPEAAGEEILHGVDFASGASGILDDTGLVTGQVIPL NQQIRDFEETVLPKLEKYTGSSGQELLSKYLILVGVGGNDYTLNYFLNLTNPRPSLEDFTSNLISTLSAKIQHLQSLGARKFVLMSLYPLGCSPTVLVRN PATGTTTCSQPLNQAAQLFNSKLKTTVDQLNKMLPCSKFVLVNSYGIINGILSNPSLAGFRDTSNSCCEVITILCSRGGKVCEDRKGYVYFDGLHPTEAV NVQLANKAYDSSSTDDVYPINVKQLVGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028738 [exp]	0	1
AT1G63830			PLAC8 family protein (.1.2.3)		Lus10028774 [exp]	1.4	0.8636
AT2G39650			Protein of unknown function (D...		Lus10002695 [exp]	1.4	0.9033
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10028345 [exp]	4.2	0.8584
AT3G01900		CYP94B2	"cytochrome P450, family 94, s...		Lus10041562 [exp]	5.3	0.7986
AT5G50175			unknown protein		Lus10043318 [exp]	6.0	0.8526
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10025424 [exp]	8.7	0.7894
AT2G47485			unknown protein		Lus10028487 [exp]	10.2	0.8497
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Lus10023827 [exp]	10.6	0.8282
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10034623 [exp]	14.9	0.7709
AT1G75450		ATCKX6, ATCKX5,...	CYTOKININ OXIDASE 6, ARABIDOPS...		Lus10024289 [exp]	15.6	0.7475

Compare expression of checked genes

Lus10028738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.