Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23730 475 / 1e-170 Galactose mutarotase-like superfamily protein (.1) AT3G61610 465 / 1e-166 Galactose mutarotase-like superfamily protein (.1) AT5G57330 417 / 6e-148 Galactose mutarotase-like superfamily protein (.1) AT3G01590 362 / 4e-126 Galactose mutarotase-like superfamily protein (.1.2) AT5G14500 361 / 7e-126 aldose 1-epimerase family protein (.1) AT4G25900 326 / 7e-112 Galactose mutarotase-like superfamily protein (.1) AT5G66530 132 / 1e-36 Galactose mutarotase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017549 [exp] 610 / 0 AT4G23730 475 / 1e-170 Galactose mutarotase-like superfamily protein (.1) Lus10012640 [exp] 482 / 2e-173 AT3G61610 511 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10010131 [exp] 479 / 4e-172 AT3G61610 518 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10003035 [exp] 447 / 9e-160 AT3G61610 476 / 6e-171 Galactose mutarotase-like superfamily protein (.1) Lus10005147 [exp] 447 / 9e-160 AT3G61610 476 / 6e-171 Galactose mutarotase-like superfamily protein (.1) Lus10020015 [exp] 421 / 6e-149 AT5G57330 534 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10015540 [exp] 413 / 3e-146 AT5G57330 522 / 0.0 Galactose mutarotase-like superfamily protein (.1) Lus10026106 [exp] 398 / 6e-140 AT5G57330 484 / 1e-173 Galactose mutarotase-like superfamily protein (.1) Lus10000414 [exp] 392 / 3e-137 AT5G57330 475 / 9e-170 Galactose mutarotase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G095300 [exp] 533 / 0 AT3G61610 461 / 3e-165 Galactose mutarotase-like superfamily protein (.1) Potri.002G167200 [exp] 478 / 1e-171 AT3G61610 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.018G089800 [exp] 430 / 6e-153 AT5G57330 513 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.006G165400 [exp] 429 / 2e-152 AT5G57330 525 / 0.0 Galactose mutarotase-like superfamily protein (.1) Potri.003G187300 [exp] 413 / 4e-146 AT5G57330 475 / 3e-170 Galactose mutarotase-like superfamily protein (.1) Potri.001G037700 [exp] 413 / 6e-146 AT5G57330 483 / 2e-173 Galactose mutarotase-like superfamily protein (.1) Potri.001G344100 [exp] 370 / 4e-129 AT5G14500 501 / 0.0 aldose 1-epimerase family protein (.1) Potri.007G023200 [exp] 147 / 4e-42 AT5G66530 483 / 1e-173 Galactose mutarotase-like superfamily protein (.1.2) Potri.019G034000 [exp] 47 / 8e-06 AT1G55370 267 / 9e-87 NDH-dependent cyclic electron flow 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF01263 [flax] [poplar] Aldose_epim Aldose 1-epimerase
Representative CDS sequence Show only first row Show all	>Lus10028739 pacid=23177228 polypeptide=Lus10028739 locus=Lus10028739.g ID=Lus10028739.BGIv1.0 annot-version=v1.0 ATGAATCATTCTGGAGCAGTTGAAATTACAAAGGATAAAAATGGGATTGATCAGATTCTGCTTCGTAACCTTCGAGGAGCCTCAGCAAGGGTTAGCTTGC ATGGGGGACAAGTTCTTTCCTGGAGAACTGACCAAGGCGAAGAATTGCTCTTCACTAGCAGTAAGGCTATATTCAAACCACCTAATCCCATCAGAGGAGG ACTTCCAATATGCTTCCCTCAGTTTGGGAATCGAGGAGCGCTGGAGCAACATGGATTTGCAAGGAAGAAGCTCTGGGTGGTTGATGATAACCCACCGCCG TTACCCACCAATGATTCAAATGGCAAGTCCTACGTTGATTTGCTCCTGAAACCATCTGATGAGGATCTCAAGAATTGGCCTCACAGTTTTGAGTTTCGGC TAAGGGTAGCATTGACAGCGGAAGGGAATGTGGCAATGATATCACGCATCAGGAACATCAATTGCAAGCCATTCAGTTTCTCAATTGCTTACCATACATA TTTCTCCATTTCAGACATCAATGAAGTGAGGGTGGAAGGATTGGAGACACTTGATTACTTAGACAACCTATGTCAAAGAGAGCGATTCACAGAACAAGGA GATGCGTTGACATTCGAATCTGAGGTGGATAGGGTGTATCTGAGTTCATCAGGTGTGGTTGCTGTCTTCGATCACCAGAAGAAGAGAACATTTCAGATAA GAAAAGAAGGACTTCCAGATATTGTGGTGTGGAATCCATGGGAGAAGAAATCAAAAGCAATGGCAGACCTTGGAGATGAAGAATACAAACAGATGTTGTG TGTTGATGGAGCAGCAATAGAGAAGCCTATAACCTTGAAGCCTGGTGAGGAATGGACTGGCCGCCTTGAACTCTCTGTCATCCATTCCAGTTGA
AA sequence Show only first row Show all	>Lus10028739 pacid=23177228 polypeptide=Lus10028739 locus=Lus10028739.g ID=Lus10028739.BGIv1.0 annot-version=v1.0 MNHSGAVEITKDKNGIDQILLRNLRGASARVSLHGGQVLSWRTDQGEELLFTSSKAIFKPPNPIRGGLPICFPQFGNRGALEQHGFARKKLWVVDDNPPP LPTNDSNGKSYVDLLLKPSDEDLKNWPHSFEFRLRVALTAEGNVAMISRIRNINCKPFSFSIAYHTYFSISDINEVRVEGLETLDYLDNLCQRERFTEQG DALTFESEVDRVYLSSSGVVAVFDHQKKRTFQIRKEGLPDIVVWNPWEKKSKAMADLGDEEYKQMLCVDGAAIEKPITLKPGEEWTGRLELSVIHSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23730			Galactose mutarotase-like supe...		Lus10028739 [exp]	0	1
AT2G40860			protein kinase family protein ...		Lus10024474 [exp]	13.9	0.6740
AT5G06440			unknown protein		Lus10021251 [exp]	14.6	0.6937
AT5G55530			Calcium-dependent lipid-bindin...		Lus10043169 [exp]	14.8	0.6988
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10043237 [exp]	26.6	0.6690
AT5G36930			Disease resistance protein (TI...		Lus10011240 [exp]	27.6	0.6558
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003394 [exp]	41.2	0.6406
AT4G04650			RNA-directed DNA polymerase (r...		Lus10008147 [exp]	42.4	0.6054
AT2G35795			Chaperone DnaJ-domain superfam...		Lus10015065 [exp]	42.7	0.6444
AT2G16700		ADF5, ATADF5	actin depolymerizing factor 5 ...		Lus10025049 [exp]	53.7	0.6203
AT1G27170			transmembrane receptors;ATP bi...		Lus10011241 [exp]	55.7	0.6198

Compare expression of checked genes

Lus10028739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.