Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59140 342 / 4e-107 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) AT3G62700 239 / 1e-70 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) AT3G21250 236 / 9e-70 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) AT1G04120 232 / 3e-68 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) AT2G47800 229 / 2e-67 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) AT3G60160 226 / 5e-66 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT3G13080 224 / 1e-65 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) AT3G13090 219 / 6e-64 ATMRP8, ATABCC6 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1) AT3G13100 216 / 8e-63 ATMRP7, ABCC7 ATP-binding cassette C7, multidrug resistance-associated protein 7 (.1) AT3G60970 211 / 2e-61 ATMRP15, ABCC15 ATP-binding cassette C15, multidrug resistance-associated protein 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017548 [exp] 640 / 0 AT3G59140 1544 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10039320 [exp] 349 / 1e-109 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10027567 [exp] 349 / 2e-109 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10004896 [exp] 274 / 4e-83 AT3G21250 1727 / 0.0 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) Lus10032345 [exp] 238 / 8e-73 AT3G59140 239 / 5e-67 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10030716 [exp] 232 / 3e-69 AT3G13080 1256 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10030718 [exp] 234 / 6e-69 AT3G13080 1249 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10011498 [exp] 233 / 9e-69 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) Lus10013201 [exp] 230 / 1e-67 AT3G13080 1498 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G135800 [exp] 447 / 3e-147 AT3G59140 1580 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.001G095600 [exp] 442 / 8e-144 AT3G59140 1639 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.015G023800 [exp] 387 / 1e-123 AT3G59140 1894 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.012G033600 [exp] 371 / 8e-118 AT3G59140 1948 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.016G122901 [exp] 352 / 1e-115 AT3G59140 1144 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.012G033500 [exp] 355 / 7e-112 AT3G59140 1948 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.003G034700 [exp] 253 / 1e-75 AT3G21250 1773 / 0.0 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) Potri.014G130500 [exp] 240 / 4e-71 AT3G62700 2059 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) Potri.002G205500 [exp] 239 / 7e-71 AT3G62700 2043 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) Potri.001G362300 [exp] 232 / 3e-68 AT3G13080 2008 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10028740 pacid=23177126 polypeptide=Lus10028740 locus=Lus10028740.g ID=Lus10028740.BGIv1.0 annot-version=v1.0 ATGGAGCCGGTTAGATATCAAGAGGTACTCAAGTGTTGTTACTTGGTAAAGGATCTGGAAATGATTCCGAACGGGGACCTGACCGAAATAGGAGAAAGGG GAGTTAACCTTAGTGGAGGGCAGAAGCAAAGAATCCAATTTGCCAGAGCACTCTATCAGGATGCTGATGCAAACCTCTTGGATGATCCATTCAGTGCTGT TGATGCACATACAGCTACTAGCCTATTCAATGAATATGTCATGGGGGCTCTATCAGAAAAGACAGTCTTACTTGTAATTCATAAAGTTGACTTCCTTCCA GCATTCAACTTGATTCTGTTGATGTCTTCAGGAGAAATCTTGAACACCGGTACTTATGATCAGATGCTGGGATCCTGTCAAGAATTCCATGAGCTTGTCA ATGCTCACAAGAACACAAACGAAAGGAAAATGCAGCGAAGTTTCAATCTTGACCAAACTACTGTAGTTTCCAACATACAGATACTGCGAGTCGATGATAA TATAACATCAACTTCAGGAGGAGATCAGTTGATAATGAAGGAAGAGAGGGAAACGGGAGATACCGGTTTCAAGCCATACCGAGCCTACCTGAGTAAGAAG AATGGATTCTTGTTCTGTTTTTTAACAGCCGTGTTCCATTTCTTGTTCCTTGCTGGCCAATTGGTACAGAACTATCTATTAGCAGCTCATATTGACAATC CTGAAGTGAGCAAAGCAGCACTTTTGACAGTTTATACCGTGATTGGATGTTTCTTGCCAATCTTCATGCTCTTTAGAAGCCTTGCTCTAGTGAGACTTGG CTGTGATGCGTCAGAGTCGATCTTTTTCACATTCTTGAACTCCCTATTCCGGGCGCCAATGTCCTTTTATGACTCCACTCCTCTGGGAAGAATTCTCAGC CGGAGATACTACTTCAACACGGCGAAAGAGCTAATGAGGATGAATGGAACAACCAAGTCATCTGTTGTTAGTCATCTTGGTGAATCCATTGCTGGAGCAA TGACAATCAGAGCCTTTGGAGAGGAATAA
AA sequence Show only first row Show all	>Lus10028740 pacid=23177126 polypeptide=Lus10028740 locus=Lus10028740.g ID=Lus10028740.BGIv1.0 annot-version=v1.0 MEPVRYQEVLKCCYLVKDLEMIPNGDLTEIGERGVNLSGGQKQRIQFARALYQDADANLLDDPFSAVDAHTATSLFNEYVMGALSEKTVLLVIHKVDFLP AFNLILLMSSGEILNTGTYDQMLGSCQEFHELVNAHKNTNERKMQRSFNLDQTTVVSNIQILRVDDNITSTSGGDQLIMKEERETGDTGFKPYRAYLSKK NGFLFCFLTAVFHFLFLAGQLVQNYLLAAHIDNPEVSKAALLTVYTVIGCFLPIFMLFRSLALVRLGCDASESIFFTFLNSLFRAPMSFYDSTPLGRILS RRYYFNTAKELMRMNGTTKSSVVSHLGESIAGAMTIRAFGEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10028740 [exp]	0	1
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10009840 [exp]	1.4	0.8907
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10032545 [exp]	5.7	0.8673
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10019898 [exp]	11.1	0.8353
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10033510 [exp]	11.5	0.8205
AT1G29660			GDSL-like Lipase/Acylhydrolase...		Lus10032316 [exp]	13.2	0.8189
AT1G60060			Serine/threonine-protein kinas...		Lus10012986 [exp]	17.1	0.8170
AT3G11680			Aluminium activated malate tra...		Lus10021272 [exp]	17.2	0.8070
AT1G02410			cytochrome c oxidase assembly ...		Lus10017058 [exp]	18.5	0.7612
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10035784 [exp]	21.0	0.8118
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10014905 [exp]	21.2	0.8077

Compare expression of checked genes

Lus10028740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.