Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59140 308 / 3e-97 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) AT3G13080 248 / 7e-76 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) AT3G21250 243 / 2e-74 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) AT3G60160 243 / 2e-74 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT3G60970 241 / 4e-74 ATMRP15, ABCC15 ATP-binding cassette C15, multidrug resistance-associated protein 15 (.1) AT3G13090 240 / 2e-73 ATMRP8, ATABCC6 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1) AT1G04120 240 / 3e-73 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) AT3G13100 238 / 2e-72 ATMRP7, ABCC7 ATP-binding cassette C7, multidrug resistance-associated protein 7 (.1) AT2G47800 219 / 9e-66 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) AT3G62700 215 / 2e-64 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017548 [exp] 381 / 5e-123 AT3G59140 1544 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10027567 [exp] 312 / 1e-98 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10039320 [exp] 308 / 5e-97 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10013201 [exp] 254 / 3e-78 AT3G13080 1498 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10004896 [exp] 251 / 2e-77 AT3G21250 1727 / 0.0 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) Lus10022858 [exp] 248 / 8e-76 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10024965 [exp] 246 / 4e-75 AT1G04120 2176 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10023139 [exp] 240 / 2e-73 AT3G62700 1659 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) Lus10042023 [exp] 240 / 3e-73 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G135800 [exp] 336 / 4e-108 AT3G59140 1580 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.001G095600 [exp] 328 / 2e-104 AT3G59140 1639 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.012G033500 [exp] 320 / 2e-101 AT3G59140 1948 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.016G122901 [exp] 306 / 3e-100 AT3G59140 1144 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.015G023800 [exp] 310 / 6e-98 AT3G59140 1894 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.012G033600 [exp] 310 / 9e-98 AT3G59140 1948 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.003G197200 [exp] 259 / 7e-80 AT3G13080 1832 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124606 [exp] 259 / 7e-80 AT3G13080 1830 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.001G362300 [exp] 255 / 1e-78 AT3G13080 2008 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.001G362200 [exp] 255 / 1e-78 AT3G13080 1952 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10028741 pacid=23177272 polypeptide=Lus10028741 locus=Lus10028741.g ID=Lus10028741.BGIv1.0 annot-version=v1.0 ATGCATATCACGATCGAAGCTCCGGAAGTTGTGGAAAGCACCAAACTTGCAGCCAACTGGCCAAGCCATGGCAAAGTGGAGATATGTAACTTGAAGGTGA GATATCAGAAGGGAAGTCCATTGGTTCTCAAGGGGATAAGTTGCAGCATTGAAGGAGGGGATAAGATTGGTGTAGTGGGGAGGACTGAGAGTAGGAAGAC AACTCTAATAAGCAGTTTGTTTAGGCTGGTGGAGCCTACAGAAGGGAAAATCATAGTGGATGGCATTGACATCTCCACAATAGGGCTCCATACCCTGAGA TCTCAGTTTGGAATCATCCCACAAGATCCAACACTCTTCTGCGGCAGTGTGAGGTATAATCTGGACCCTTTGTCGGAGCACACTGACCTAGAAATATGGG AGGTTCTCAAGAAATGTCAGCTCCATGAAGCCATTCAACAGAAAGAAGAAGGCTTGAACACATCAATAGCACAAGATCGAACAAACTGGAGCATGGGGCA GAGGCAGCTGTTCTGTCTAGGGAGAGCACTTCTGAGAAAGAGCAAGATTTTGGTTCTGGACAAAGCAACTGCATCCATTGACAATGCAACTGATGCAATC CTTCAGTAG
AA sequence Show only first row Show all	>Lus10028741 pacid=23177272 polypeptide=Lus10028741 locus=Lus10028741.g ID=Lus10028741.BGIv1.0 annot-version=v1.0 MHITIEAPEVVESTKLAANWPSHGKVEICNLKVRYQKGSPLVLKGISCSIEGGDKIGVVGRTESRKTTLISSLFRLVEPTEGKIIVDGIDISTIGLHTLR SQFGIIPQDPTLFCGSVRYNLDPLSEHTDLEIWEVLKKCQLHEAIQQKEEGLNTSIAQDRTNWSMGQRQLFCLGRALLRKSKILVLDKATASIDNATDAI LQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10028741 [exp]	0	1
AT4G22410			Ubiquitin C-terminal hydrolase...		Lus10035548 [exp]	3.9	0.8819
AT3G44150			unknown protein		Lus10021005 [exp]	5.7	0.8658
AT5G55930		ATOPT1	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10004237 [exp]	6.5	0.7837
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10021338 [exp]	6.9	0.8598
					Lus10033096 [exp]	8.0	0.8598
AT1G27220			paired amphipathic helix repea...		Lus10000805 [exp]	8.9	0.8598
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030286 [exp]	9.8	0.8598
AT5G55930		ATOPT1	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10035124 [exp]	10.0	0.6314
AT3G57230	MADS	AGL16	AGAMOUS-like 16 (.1.2)		Lus10029556 [exp]	11.0	0.6029
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10010229 [exp]	11.2	0.8520

Compare expression of checked genes

Lus10028741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.