Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01420 213 / 7e-66 Glutaredoxin family protein (.1) AT5G06470 192 / 7e-60 Glutaredoxin family protein (.1) AT5G03870 157 / 1e-44 Glutaredoxin family protein (.1) AT3G11773 148 / 6e-44 Thioredoxin superfamily protein (.1.2) AT4G10630 148 / 9e-42 Glutaredoxin family protein (.1) AT3G57070 149 / 2e-41 Glutaredoxin family protein (.1) AT1G64500 133 / 8e-36 Glutaredoxin family protein (.1) AT2G41330 131 / 1e-34 Glutaredoxin family protein (.1) AT5G13810 126 / 6e-34 Glutaredoxin family protein (.1) AT5G39865 129 / 7e-34 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017547 [exp] 539 / 0 AT5G01420 227 / 2e-71 Glutaredoxin family protein (.1) Lus10013597 [exp] 186 / 9e-58 AT5G06470 179 / 2e-56 Glutaredoxin family protein (.1) Lus10021255 [exp] 182 / 3e-56 AT5G06470 185 / 7e-59 Glutaredoxin family protein (.1) Lus10021353 [exp] 162 / 7e-46 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10017029 [exp] 160 / 2e-45 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10008270 [exp] 142 / 2e-39 AT4G10630 305 / 7e-103 Glutaredoxin family protein (.1) Lus10003194 [exp] 140 / 4e-38 AT1G64500 322 / 3e-108 Glutaredoxin family protein (.1) Lus10033238 [exp] 138 / 1e-37 AT4G10630 297 / 1e-99 Glutaredoxin family protein (.1) Lus10039537 [exp] 129 / 6e-35 AT5G13810 261 / 4e-87 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G243700 [exp] 299 / 1e-99 AT5G01420 213 / 3e-65 Glutaredoxin family protein (.1) Potri.008G016100 [exp] 281 / 3e-92 AT5G01420 209 / 2e-63 Glutaredoxin family protein (.1) Potri.016G067700 [exp] 201 / 2e-62 AT5G06470 206 / 4e-66 Glutaredoxin family protein (.1) Potri.006G201300 [exp] 201 / 2e-62 AT5G06470 213 / 1e-68 Glutaredoxin family protein (.1) Potri.006G212700 [exp] 166 / 1e-47 AT5G03870 332 / 2e-111 Glutaredoxin family protein (.1) Potri.016G079400 [exp] 158 / 9e-45 AT5G03870 301 / 2e-99 Glutaredoxin family protein (.1) Potri.003G141800 [exp] 154 / 9e-44 AT1G64500 315 / 8e-106 Glutaredoxin family protein (.1) Potri.006G041800 [exp] 148 / 5e-41 AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1) Potri.001G448300 [exp] 144 / 5e-40 AT4G10630 285 / 6e-95 Glutaredoxin family protein (.1) Potri.T125406 [exp] 136 / 6e-38 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10028742 pacid=23177298 polypeptide=Lus10028742 locus=Lus10028742.g ID=Lus10028742.BGIv1.0 annot-version=v1.0 ATGAAGGGAATGAAAGGGAAACTCCTGAAGAAGCTCAATTCCATCAAACCGGTCGCGCAGTTGAAGCAGCCCGCTCTCGTCCTTCAGCCGATTTCAGTAC ACCACTTCCAACCAGTTTCCGAAAATCAGCCGGCCAAACCTCCGACCCAGACTCCATCCACAACCAAGGAGGCCGAGGTCGGACTTTTCAAATTGGATCT CGATGATTCGGATGCAAATTTCGCTGACGACAAGGAGAATTTCGGACGGCTGCCGGTGAAGGCTCTGTTTCCGTCCGGCGGCGGAGGCGGAGAAGGGAAT CTTATGGAGCAGACGCCTCTGTCGGAAATTGACATCTCGTCTTTCCGGCGGCCGGCCTTCGATTCTATCACCCTCTTTGATCCAAATCTTCTGGCAGCAT TCAAGAAGGCGCTGTCGGATTACACGCAGTGGATCGAGGAAGAAAGGAGAGCCCGGAAACAGAGTCTCAAACAAACAGACGAACACCAAGGAGGAGAAAA AAAGGAAGAGCCTTTACTCAAACCCGGCCGAACCGAAGACGAAGCCGAAACCAACCCGTTACTAAGATTCGAAGACAAATGCCCGCCGGGTGGAACCGAC GCGGTGATTCTCTACACGACAACACTAAGAGGGATCAGAAAAACCTTCGAGGATTGTAGTGGGGTCCAGTTTCTGTTACAGAGTCTTCGGATTCGTTACC ACGAGAGGGACGTGTCGATGCACAGAGAGTACAGGGAAGAGCTCTGGCGAGTGTTGGGCGGGAAGATGATGCCGCCTCGGCTTTTCGTCAAGGGGAAGTA CATCGGCGGAGCAGAGGAAGTTTTGGGTTTGAATGAGCAAGGGGAGTTCAGACCTCTGTTCGCAGGGATTCCAGCTGGTGATAGTTTAATGGAGCCTTGT GAAGCCTGCAACGGAGTTCGTTTCGTGGTCTGTTTCAATTGCAGTGGCAGCCATCGGATCTTAACCGGAGATGATTGGTCGTGGAGTGAATGTCTGGATT GCAATGAGAATGGTTTGATTGTCTGTCGCCATTGCTGCTGCTGA
AA sequence Show only first row Show all	>Lus10028742 pacid=23177298 polypeptide=Lus10028742 locus=Lus10028742.g ID=Lus10028742.BGIv1.0 annot-version=v1.0 MKGMKGKLLKKLNSIKPVAQLKQPALVLQPISVHHFQPVSENQPAKPPTQTPSTTKEAEVGLFKLDLDDSDANFADDKENFGRLPVKALFPSGGGGGEGN LMEQTPLSEIDISSFRRPAFDSITLFDPNLLAAFKKALSDYTQWIEEERRARKQSLKQTDEHQGGEKKEEPLLKPGRTEDEAETNPLLRFEDKCPPGGTD AVILYTTTLRGIRKTFEDCSGVQFLLQSLRIRYHERDVSMHREYREELWRVLGGKMMPPRLFVKGKYIGGAEEVLGLNEQGEFRPLFAGIPAGDSLMEPC EACNGVRFVVCFNCSGSHRILTGDDWSWSECLDCNENGLIVCRHCCC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01420			Glutaredoxin family protein (....		Lus10028742 [exp]	0	1
AT4G13370			Plant protein of unknown funct...		Lus10019398 [exp]	3.0	0.9685
AT4G13370			Plant protein of unknown funct...		Lus10043255 [exp]	4.6	0.9615
AT5G58480			O-Glycosyl hydrolases family 1...		Lus10026387 [exp]	6.0	0.9227
AT4G02800			unknown protein		Lus10014668 [exp]	6.2	0.9615
AT4G32830		ATAUR1	ataurora1 (.1)		Lus10006033 [exp]	9.5	0.9572
AT5G03870			Glutaredoxin family protein (....		Lus10017029 [exp]	10.5	0.9429
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10041886 [exp]	11.0	0.9591
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10028434 [exp]	12.5	0.9528
AT5G01420			Glutaredoxin family protein (....		Lus10017547 [exp]	14.5	0.9358
AT1G64760			O-Glycosyl hydrolases family 1...		Lus10031098 [exp]	15.5	0.9269

Compare expression of checked genes

Lus10028742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.