Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23720 160 / 8e-47 Protein of unknown function (DUF1191) (.1) AT4G01140 132 / 3e-36 Protein of unknown function (DUF1191) (.1) AT3G08600 110 / 8e-28 Protein of unknown function (DUF1191) (.1) AT4G11950 54 / 3e-08 Protein of unknown function (DUF1191) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017546 [exp] 554 / 0 AT4G23720 181 / 5e-55 Protein of unknown function (DUF1191) (.1) Lus10007859 [exp] 107 / 5e-27 AT4G01140 115 / 9e-30 Protein of unknown function (DUF1191) (.1) Lus10003033 [exp] 72 / 3e-14 AT4G01140 89 / 6e-20 Protein of unknown function (DUF1191) (.1) Lus10001191 [exp] 70 / 2e-13 AT4G22900 224 / 2e-71 Protein of unknown function (DUF1191) (.1) Lus10006713 [exp] 67 / 3e-12 AT4G11950 181 / 2e-54 Protein of unknown function (DUF1191) (.1) Lus10024481 [exp] 65 / 4e-12 AT1G62981 158 / 7e-47 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) Lus10014139 [exp] 63 / 4e-11 AT4G22900 169 / 1e-50 Protein of unknown function (DUF1191) (.1) Lus10002998 [exp] 61 / 2e-10 AT4G11950 224 / 2e-71 Protein of unknown function (DUF1191) (.1) Lus10014138 [exp] 59 / 2e-09 AT4G11950 237 / 1e-76 Protein of unknown function (DUF1191) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G096000 [exp] 317 / 2e-108 AT4G23720 209 / 4e-66 Protein of unknown function (DUF1191) (.1) Potri.003G135400 [exp] 299 / 2e-101 AT4G23720 190 / 1e-58 Protein of unknown function (DUF1191) (.1) Potri.002G166900 [exp] 167 / 1e-49 AT4G01140 162 / 8e-48 Protein of unknown function (DUF1191) (.1) Potri.014G094000 [exp] 166 / 1e-49 AT4G01140 140 / 2e-39 Protein of unknown function (DUF1191) (.1) Potri.006G111700 [exp] 136 / 9e-38 AT3G08600 249 / 1e-81 Protein of unknown function (DUF1191) (.1) Potri.016G141100 [exp] 133 / 1e-36 AT3G08600 176 / 7e-53 Protein of unknown function (DUF1191) (.1) Potri.001G112800 [exp] 86 / 5e-19 AT1G62981 213 / 8e-67 Protein of unknown function (DUF1191) (.1), Protein of unknown function (DUF1191) (.2) Potri.003G119400 [exp] 82 / 1e-17 AT4G11950 227 / 9e-73 Protein of unknown function (DUF1191) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0661 [flax] [poplar] Gain PF06697 [flax] [poplar] DUF1191 Protein of unknown function (DUF1191)
Representative CDS sequence Show only first row Show all	>Lus10028743 pacid=23177159 polypeptide=Lus10028743 locus=Lus10028743.g ID=Lus10028743.BGIv1.0 annot-version=v1.0 ATGAGTTTGAATATCATCTGGTTACTGATGAGTTTCTGTGTTTCAGCATCAGTAGATGGGTTAGCAGACAACTTCACTGCAGAATCTCTGGATGCTTTTC TCGAGGCTTCAGCTTTCCAGACTGTGGTCCAGTACCGGCGCCATACCGGTGCTCTATATCAAGCTCTGCTCCCTTCCAATTTATCAGGTATGCAGGTGTC AGTTGTAAGGCTGAGAAGCAAGAGGCTCTGGAACATTGGTGCCAACTTCACTTTCTTCCAGATTCCACCAAGAACCATGACAACCCCTCACGTGAAGAGA CTGGCGATTGTTTACCAGGACTTGGGGAATCGGTCGCCTGAATATTACTCCGTTCCGGGATACTCGTTGCTCGCTCCTGTAGTTGGGTTCCAGGTGTTTG ATGTTTCAAACATCAGTGCCAAAAGCATGATCAGAAAGATCAGCCTTGATACAGGAGGAAGCCCTGCTGTTGTGAGCTTTCCTCCTCCTCAAGGCTCGAA AATCGATGATAGCTCGAGAGCGCAATGCATCGTGTTCGGGGCTGATGGGAGCTTTAACCTCAGCGATGTCATAGGCCGGTCGAACATGACTTGTAATGCT CACGATCAAGGCCATTTCTTCTCTGTTGTGGTTCCAGTAGAGAGGAATATTGATGAAAGGTTAAAGCACAGGAGGAAGGATAAGAAGCCCTGGTTTCTGT GGATGGTGCTGCTGGGAACTGTGGTTGGATTAGGGGGTTTGACTCTACTGGTATTCCTTGGCTTGATGTCGAAGAAGCTTCTGAAGACGAAGAAGATTCA GGTGATGGAAAGACAGGCTGATGAAGATTTGGTTCTTGAAACCACATGGATAAGGCATAGCAAAATGCCTTGTGCTGATGTTACAAGAACTCAGCCTACC ATTGAAACTGGTGATTTTCCTTAG
AA sequence Show only first row Show all	>Lus10028743 pacid=23177159 polypeptide=Lus10028743 locus=Lus10028743.g ID=Lus10028743.BGIv1.0 annot-version=v1.0 MSLNIIWLLMSFCVSASVDGLADNFTAESLDAFLEASAFQTVVQYRRHTGALYQALLPSNLSGMQVSVVRLRSKRLWNIGANFTFFQIPPRTMTTPHVKR LAIVYQDLGNRSPEYYSVPGYSLLAPVVGFQVFDVSNISAKSMIRKISLDTGGSPAVVSFPPPQGSKIDDSSRAQCIVFGADGSFNLSDVIGRSNMTCNA HDQGHFFSVVVPVERNIDERLKHRRKDKKPWFLWMVLLGTVVGLGGLTLLVFLGLMSKKLLKTKKIQVMERQADEDLVLETTWIRHSKMPCADVTRTQPT IETGDFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23720			Protein of unknown function (D...		Lus10028743 [exp]	0	1
AT4G23720			Protein of unknown function (D...		Lus10017546 [exp]	3.9	0.7701
AT5G53310			myosin heavy chain-related (.1...		Lus10027569 [exp]	9.8	0.7584
AT5G50160		ATFRO8, FRO8	ferric reduction oxidase 8 (.1...		Lus10019488 [exp]	10.6	0.8063
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10018296 [exp]	19.6	0.7655
					Lus10012006 [exp]	22.4	0.7391
AT3G13340			Transducin/WD40 repeat-like su...		Lus10041268 [exp]	27.3	0.7455
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Lus10017481 [exp]	30.0	0.7426
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10034612 [exp]	32.9	0.7399
AT2G14750		APK1, ATAKN1, A...	ADENOSINE-5'-PHOSPHOSULFATE \(...		Lus10033788 [exp]	35.3	0.7165
AT5G08139			RING/U-box superfamily protein...		Lus10023235 [exp]	35.6	0.7595

Compare expression of checked genes

Lus10028743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.