Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61600 711 / 0 ATPOB1 POZ/BTB containin G-protein 1 (.1.2) AT2G46260 689 / 0 BTB/POZ/Kelch-associated protein (.1) AT4G01160 471 / 4e-162 BTB/POZ/Kelch-associated protein (.1) AT2G30600 56 / 4e-08 BTB/POZ domain-containing protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017545 [exp] 1008 / 0 AT3G61600 820 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10032340 [exp] 874 / 0 AT3G61600 827 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10024723 [exp] 801 / 0 AT3G61600 759 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Lus10016014 [exp] 45 / 0.0001 AT2G30600 1131 / 0.0 BTB/POZ domain-containing protein (.1.2.3.4.5) Lus10029732 [exp] 42 / 0.0006 AT4G08455 354 / 2e-124 BTB/POZ domain-containing protein (.1) Lus10042763 [exp] 42 / 0.0006 AT4G08455 354 / 1e-124 BTB/POZ domain-containing protein (.1) Lus10012262 [exp] 43 / 0.0008 AT2G30600 1117 / 0.0 BTB/POZ domain-containing protein (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G093700 [exp] 734 / 0 AT3G61600 945 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.002G166700 [exp] 733 / 0 AT3G61600 931 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.003G135300 [exp] 729 / 0 AT3G61600 733 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.001G096100 [exp] 706 / 0 AT3G61600 655 / 0.0 POZ/BTB containin G-protein 1 (.1.2) Potri.001G468700 [exp] 47 / 3e-05 AT1G55760 522 / 0.0 BTB/POZ domain-containing protein (.1) Potri.002G077000 [exp] 43 / 0.0004 AT4G08455 369 / 2e-130 BTB/POZ domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF07707 [flax] [poplar] BACK BTB And C-terminal Kelch CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10028744 pacid=23177179 polypeptide=Lus10028744 locus=Lus10028744.g ID=Lus10028744.BGIv1.0 annot-version=v1.0 ATGAGAGAGCTTGGCGCGGACCTTTTCGAACCTCGAACGCTGATGGACTCCGATTTCTCCACGGCCAGGCCTGCCGGGTCCGCTGCGGATTCCGACTTTG GATTTGCCTTTAACGATCAGAATTTCTCTGATAGGGTCCTCAAGATAGAGATAATCGCCGATTTGCCCGACATCAAGTCTGAGGTTGAGGGCGCCATCAC CCTCGCCGAGTGGGCTCGCAACCGGAAGCGCCGGAGGGAGGAGATTAAGAAGGACAGCGTGGCAGATGTTGTTGGACAAAGCGCAGAGCAGGTGTTGAAT TTGAATATCCCAGGAACAGAGGAAACTTTGGCTTACGATAACCAAGATGAAGAAGTTGTAGCCATGATTGAAGAATCTGCAGCGGATGGAGGATTGAACT TGAATGAACAAGGTGATGAGCCCCCCACTGTCTGTGAATATGGATGGAGCATGGACTGCTCAACTGTGCTTAGAGTTAATACTATACATATTAGCTCACC AATATTAGCGGCAAAGAGCCCATTCTTTTACAAGTTGTTCTCCAATGGTATGAGAGAATCAGATCTACGGCATGTAACTCTGCGGATACATGAATCTGAA GAAGCAGCCCTGATGGAACTTCTCAATTTTATGTATAGCAATACACTATCGGCAAACACTGCTACTGCTTTGCTGGATATATTGATGGCTGCCGACAAGT TTGAAGTCGTGTCATGTATGAGATATTGCAGTAGATTGCTTAGAAACTTGTCTATGACTAGTGAGTCAGCACTGCTCTACTTGGACCTTCCTTCTAACGT GTTATTGGCTGAAGCTGTTCAGCCACTGACTGATGCCGCAAAACAGTTTCTTGCTGGGCGATACAAGGACATGTCCAAGTTTCAAGAGGAGATCCTTAAC TTGCCATTGGCTGGTATTGAGGCAGTACTATCCAGTGACGATCTCCACGTAGTTTCAGAGGATGCTGTGTATGATTTTGTACTTAAGTGGGCTCGCACTC ATTACCCAAGATCGCACTCATTACCCGAGAGTAGAGGAACGTCGAGAAGTACTTGCCACACGGTTTGTGCGACTAATCCGTTTCCCATTCATGTCAAGCC GGAAATTAAAGAAGTTGTTCTGGATGCACTCTTTTTCAAGAACGAGACGCCACATAGGCAGCGCGTTCTTGCAGCAGAAGAGGCTAGTGGCCCATCTCGC CGCCTCGTCGAGAGATCATTCAAATACCGACCTGTTAAGGTGATGGAGTTTGAGCTTCCACGTCAGCAGTGTCTTGTGTACCTGGACCTAAAACGAGACG AGTGTACACATTTATACCCATCTGGCCGAGTGTATTCACAAGCATTTCACCTCGGTGGCCAAGGTTTTTTCTTGTCTGCCCACTGTAATATGGACCAGCA CAGCGCTTTCCACTGTTTTGGATTGTTTCTGGGAATGCAGGAGAAAGGATCATTGAGCTTTGCTGTTGATTACGAGTTTGCAGCAAGGTCGAAGCCATCA GAAGAGTTTGCCAGCAAATACAAAGGAACGTACACTTTCACAGGAGGCAAGGCTGTTGGATACAGGAACCTGTTCGGTGTACCATGGACGGCATTCATGG CTGAAGATAGCCCGTATTTCATCAACGACATCCTACATCTCAGGGCGGAGTTGACTATAGGGCAGTGA
AA sequence Show only first row Show all	>Lus10028744 pacid=23177179 polypeptide=Lus10028744 locus=Lus10028744.g ID=Lus10028744.BGIv1.0 annot-version=v1.0 MRELGADLFEPRTLMDSDFSTARPAGSAADSDFGFAFNDQNFSDRVLKIEIIADLPDIKSEVEGAITLAEWARNRKRRREEIKKDSVADVVGQSAEQVLN LNIPGTEETLAYDNQDEEVVAMIEESAADGGLNLNEQGDEPPTVCEYGWSMDCSTVLRVNTIHISSPILAAKSPFFYKLFSNGMRESDLRHVTLRIHESE EAALMELLNFMYSNTLSANTATALLDILMAADKFEVVSCMRYCSRLLRNLSMTSESALLYLDLPSNVLLAEAVQPLTDAAKQFLAGRYKDMSKFQEEILN LPLAGIEAVLSSDDLHVVSEDAVYDFVLKWARTHYPRSHSLPESRGTSRSTCHTVCATNPFPIHVKPEIKEVVLDALFFKNETPHRQRVLAAEEASGPSR RLVERSFKYRPVKVMEFELPRQQCLVYLDLKRDECTHLYPSGRVYSQAFHLGGQGFFLSAHCNMDQHSAFHCFGLFLGMQEKGSLSFAVDYEFAARSKPS EEFASKYKGTYTFTGGKAVGYRNLFGVPWTAFMAEDSPYFINDILHLRAELTIGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10028744 [exp]	0	1
AT5G62570			Calmodulin binding protein-lik...		Lus10034121 [exp]	2.2	0.9134
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10041237 [exp]	5.3	0.9113
AT4G36980			unknown protein		Lus10009350 [exp]	7.7	0.8772
AT2G32970			unknown protein		Lus10035309 [exp]	9.8	0.8952
AT2G45530			RING/U-box superfamily protein...		Lus10033252 [exp]	9.9	0.8822
AT3G46590		ATTRP2, TRFL1	TRF-like 1 (.1.2.3)		Lus10016527 [exp]	10.2	0.9050
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10018596 [exp]	11.3	0.8891
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10021948 [exp]	11.6	0.9078
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10037222 [exp]	13.4	0.8497
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10041184 [exp]	15.9	0.8948

Compare expression of checked genes

Lus10028744 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.