Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017544 [exp] 565 / 0 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G135200 [exp] 552 / 0 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF03417 [flax] [poplar] AAT Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase
Representative CDS sequence Show only first row Show all	>Lus10028745 pacid=23177264 polypeptide=Lus10028745 locus=Lus10028745.g ID=Lus10028745.BGIv1.0 annot-version=v1.0 ATGGAGTCCAAAGGGTTGGAGCTCTTCGAAGTCGGACCTTGTGAAGATGGCTACCAGATGGGTTTCCTGATAGGCAAAAGGTTTGCCAATGTGATCAAAA GCCGGTTGGCAACAGACCTTATTCTTCAGAACCAGCTTCTTCCTTTTGCTCTTACCGTACAAGGTCAGCAGTTTATCACCCAACTCTCCAAGAACAACAA AACCATGTTCCCCGGATATTGGGATGAGCTCCTGGGGACTGCTGCCGGTAGTGGAGTGTCTGTTCTTGATGTGATCTTGATCAATTTCAGGAAGGAGATT CTTCCTTTCCTTCCAAAGACAGTGTCAACGACCCCTTATTATGATGTCGATGCTCCAGATGACTGTTCTGATGTTCTTGTTGTCAGTAAGAGCCTAGCCA TTGCTACTCACAATGAGGATGCTAATGTTGCTTTAGTCGGTCACACCTATCTGATCAAGGCAAAGCTGCAGAACGGGCTGGTGTTCCTTGGTTATACATA TGCAGGAGAGCTTCCTAGCTGTGCATTTGGGTTCAATACTCATGGATTGGCGTTCACATTGAACTCAGTTCCTCCATCTGAACATGAAATTGTAAAAGGC GGAATAGGAAGGAACTTTGTCTCTAGAGATCTCCTGGAAGCTACAAGCATGACAGATGCACTCAGAAGAATACATTCCTATGAAGTTTCAGTAGGGCACT GCTACAATCTCGTTTACATGCCGGATCGGAAGATAGTGAACGTCGAAACAGCCTCAAAGAAGCGGGTTTCGGTTCATGAGGTTGGTTCAACACCCTTCTT CCATGCAAACATGTATCTCCACCTTCAAGTTGATCAGGTAGAAGATGACAACTCAAAAAGCAGGCAAGAAAGAGCTGGTGTTCTGCAGAAAAGATCAAAA GAAGATTTCCTGTCAATTCTAGGAGATACGGGAGACAAAAGATACCCCATTTACATGAATGGTCCAACTCTGTACACCCTATGCACAGCAATGATAGATC TGGATAAACAAACACTATCAATTTTCAAGGGGAATCCAAAGCAGGGAGAAATCTCCCATGTATTCTCCGTGTCTTCAGCAGATTTCATGACTTTTCAATA A
AA sequence Show only first row Show all	>Lus10028745 pacid=23177264 polypeptide=Lus10028745 locus=Lus10028745.g ID=Lus10028745.BGIv1.0 annot-version=v1.0 MESKGLELFEVGPCEDGYQMGFLIGKRFANVIKSRLATDLILQNQLLPFALTVQGQQFITQLSKNNKTMFPGYWDELLGTAAGSGVSVLDVILINFRKEI LPFLPKTVSTTPYYDVDAPDDCSDVLVVSKSLAIATHNEDANVALVGHTYLIKAKLQNGLVFLGYTYAGELPSCAFGFNTHGLAFTLNSVPPSEHEIVKG GIGRNFVSRDLLEATSMTDALRRIHSYEVSVGHCYNLVYMPDRKIVNVETASKKRVSVHEVGSTPFFHANMYLHLQVDQVEDDNSKSRQERAGVLQKRSK EDFLSILGDTGDKRYPIYMNGPTLYTLCTAMIDLDKQTLSIFKGNPKQGEISHVFSVSSADFMTFQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10028745 [exp]	0	1
					Lus10017544 [exp]	1.0	0.8806
AT3G61260			Remorin family protein (.1)		Lus10027460 [exp]	9.7	0.7423
AT1G25375			Metallo-hydrolase/oxidoreducta...		Lus10005109 [exp]	13.4	0.7046
AT2G02410			unknown protein		Lus10026272 [exp]	18.0	0.7240
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10014661 [exp]	22.4	0.6774
AT1G65295			unknown protein		Lus10026997 [exp]	24.0	0.6992
AT5G23870			Pectinacetylesterase family pr...		Lus10039238 [exp]	25.1	0.7012
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10034753 [exp]	26.4	0.7064
AT2G47880			Glutaredoxin family protein (....		Lus10005937 [exp]	26.5	0.6740
AT2G33205			Serinc-domain containing serin...		Lus10023690 [exp]	27.1	0.6640

Compare expression of checked genes

Lus10028745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.