Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41620 431 / 2e-144 unknown protein AT1G64180 358 / 1e-116 intracellular protein transport protein USO1-related (.1) AT3G11590 169 / 5e-45 unknown protein AT2G46250 163 / 6e-44 myosin heavy chain-related (.1) AT1G50660 119 / 5e-28 unknown protein AT5G22310 91 / 5e-19 unknown protein AT1G11690 50 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017543 [exp] 942 / 0 AT5G41620 500 / 6e-170 unknown protein Lus10003027 [exp] 204 / 2e-58 AT5G41620 203 / 5e-58 unknown protein Lus10007858 [exp] 158 / 4e-43 AT5G41620 156 / 1e-42 unknown protein Lus10021324 [exp] 160 / 2e-41 AT3G11590 530 / 3e-180 unknown protein Lus10017001 [exp] 152 / 4e-39 AT3G11590 587 / 0.0 unknown protein Lus10013311 [exp] 142 / 1e-35 AT3G11590 332 / 1e-105 unknown protein Lus10013312 [exp] 141 / 1e-35 AT3G11590 285 / 1e-88 unknown protein Lus10005200 [exp] 140 / 6e-35 AT3G11590 322 / 1e-101 unknown protein Lus10040076 [exp] 136 / 2e-33 AT1G50660 756 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G135000 [exp] 634 / 0 AT5G41620 494 / 1e-167 unknown protein Potri.001G096200 [exp] 629 / 0 AT5G41620 523 / 6e-180 unknown protein Potri.014G093400 [exp] 399 / 3e-131 AT5G41620 347 / 8e-111 unknown protein Potri.002G166600 [exp] 389 / 1e-127 AT5G41620 345 / 6e-110 unknown protein Potri.004G199500 [exp] 173 / 2e-46 AT3G11590 399 / 6e-131 unknown protein Potri.016G074300 [exp] 168 / 1e-44 AT3G11590 560 / 0.0 unknown protein Potri.009G160900 [exp] 153 / 1e-39 AT3G11590 399 / 9e-132 unknown protein Potri.006G207800 [exp] 151 / 1e-38 AT3G11590 582 / 0.0 unknown protein Potri.011G090100 [exp] 124 / 1e-29 AT1G50660 689 / 0.0 unknown protein Potri.004G015800 [exp] 98 / 2e-21 AT1G50660 390 / 1e-126 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028746 pacid=23177252 polypeptide=Lus10028746 locus=Lus10028746.g ID=Lus10028746.BGIv1.0 annot-version=v1.0 ATGCACAGGGGTGGAAATTTCACCAGCAATGGCGGCGGAGGAGGGGGAGGTGATCCTAGGCTGCCGCGTCACCACCGCCCGCAAAATCGTCACCGTGGTT ATAAGGACAAGGGAATCGACCTCTCCCACTTCTTCCCAGACCCTTCTCCCAGCTCTCCTGATCAGCCAGAAAGTGCAGGCAGTCTGAGGAGGCATATTGC AGCATCACTGATTCAGCACCATCGCTCCATCGAGAGAAGTAATCGTGCTCTACAGCCTGTCTCCCCTGCAAGTTATGGCAGTTCTTTGGAGATGACTCCT TACAATCCTGCAATGACACCAACCAGCTCACTAGAATTCAAGGCAAGACATGGCGGGGACTCCTCGAATTACAATCTGAAAACTTCTACTGAACTGTTAA AAGTACTAAATAGAATATGGAGCTTGGAGGAACAGCACACATCCAACATGTCACTCATAAAGGCTCTAAGAACCGAGCTAGAGCGTTCCCTCGCCAGGAT TAAAGAGCTCCATCGCGACCAGCAGGCCGATCGGCGCGAAATGGATGAGCTGATGAAGCAAGTCGCCGAAGAAAAACTAGTTCAGAAAAGTAAAGAACAC GACCGCTTGCACGCTGCAGTCCAGTCGTTGAGGGACGAGCTGGACGACGAGAGGAAGTTGAGGAAAAGGTCCGAGAGCTTGCACAGGAAGTTAGCTCGAG ACCTTTCCGACGTGAAATCTTCTTTCACCGAGGCTTTGAAAGAGGTGGAGAAGGAGAGGAGGTCGAGAATGCTGTTGGAAGATCTCTGCGACGAGTTTGC TAAAGGGATTAAAGACTACGAACAAGAAGCGCATGTTTCGAAACAGAAATATTCCGACTGGACTGGGAAGGGTGATGGCGATCGATTGATTCTCCATATA TCAGAGTCATGGCTGGACGAGAGAATGCAGATGAGGCTTGACGAAGCTCAGCATGGTTTTTCGGACAACAGTTCGATAGTGGACAAGCTAGGTTTTGAGA TAGAGACGTTTCTCAAGGCTAGAAGGATGGCAGACTCGAAAGGTGGCTTGGATAGAACGATTACTTCGAAGGAAAGGCGCAATTCGATGGAATCAGTCCC GTTTAATGAAGCTGTGAGTGCTCCTCGAGACGTAGGAGATGAAGATGATTCGGTGGGAAGCGATTCGCAATGTTTCGAGCTTGAAAAACCGTCAAAAGGT GATCAGAACAATGTACATGAACATGAAGATGAAGTGGTCAAACCTAGTACTAGTGTATCAAAGAAGAAGCTCTCATCGTCTCGGGAAAGGGTTAAAAGCC GAAGTCCTTCGAGCTTGCAAGTGAGATTCGAGGAATATATGGTGAAGGCAATGTCATCGGATGTGGATAAGAAACCGGAGATGGTTGACTTGGAGGAGAA GAAACCAATTGATATGGGAACCAATGACGATGGCGATGAGAAGATCCTACATTCGAATCGGAATTATGGAATGGATAACTTGATCAGGAGTCATGTAGCG GCATCAGAAGCTGATGAAAATGCAGCAGGGGAGGCTTCTTGTAGCTACCCCTCGCGAAGGACTGCTGCTGCTAGTCCAATACGACAGTGGATGGCGAAAC TGACGACCTCGGAAGTTGAGGTCGCAGAATTGTCCGCCAAGTTGCCTGCAGGGTCGAAGGAGAACACATTGAAGGTGAAGCTTCTTGAGGTGAGGTCCAA AGGGATGCGGTCGCGGTTGAAGCTGTTCAGAGGTTCGTCCTAG
AA sequence Show only first row Show all	>Lus10028746 pacid=23177252 polypeptide=Lus10028746 locus=Lus10028746.g ID=Lus10028746.BGIv1.0 annot-version=v1.0 MHRGGNFTSNGGGGGGGDPRLPRHHRPQNRHRGYKDKGIDLSHFFPDPSPSSPDQPESAGSLRRHIAASLIQHHRSIERSNRALQPVSPASYGSSLEMTP YNPAMTPTSSLEFKARHGGDSSNYNLKTSTELLKVLNRIWSLEEQHTSNMSLIKALRTELERSLARIKELHRDQQADRREMDELMKQVAEEKLVQKSKEH DRLHAAVQSLRDELDDERKLRKRSESLHRKLARDLSDVKSSFTEALKEVEKERRSRMLLEDLCDEFAKGIKDYEQEAHVSKQKYSDWTGKGDGDRLILHI SESWLDERMQMRLDEAQHGFSDNSSIVDKLGFEIETFLKARRMADSKGGLDRTITSKERRNSMESVPFNEAVSAPRDVGDEDDSVGSDSQCFELEKPSKG DQNNVHEHEDEVVKPSTSVSKKKLSSSRERVKSRSPSSLQVRFEEYMVKAMSSDVDKKPEMVDLEEKKPIDMGTNDDGDEKILHSNRNYGMDNLIRSHVA ASEADENAAGEASCSYPSRRTAAASPIRQWMAKLTTSEVEVAELSAKLPAGSKENTLKVKLLEVRSKGMRSRLKLFRGSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41620			unknown protein		Lus10028746 [exp]	0	1
AT1G29120			Hydrolase-like protein family ...		Lus10013909 [exp]	4.2	0.7821
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10022080 [exp]	5.7	0.8046
AT5G11160		APT5	adenine phosphoribosyltransfer...		Lus10001497 [exp]	10.5	0.7413
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10002720 [exp]	13.7	0.7236
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10000260 [exp]	17.2	0.6757
AT2G28350	ARF	ARF10	auxin response factor 10 (.1)		Lus10016090 [exp]	19.4	0.7472
AT2G33793			unknown protein		Lus10018490 [exp]	20.6	0.6871
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10033152 [exp]	24.5	0.7572
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10012325 [exp]	24.5	0.6947
AT4G01580	B3		AP2/B3-like transcriptional fa...		Lus10000750 [exp]	27.7	0.7586

Compare expression of checked genes

Lus10028746 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.