Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41610 253 / 3e-79 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT3G17630 247 / 6e-77 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT4G23700 236 / 1e-72 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT1G64170 209 / 8e-63 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT3G53720 194 / 2e-57 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT2G13620 154 / 6e-43 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G06970 98 / 3e-23 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT5G01690 90 / 1e-20 ATCHX27 cation/H+ exchanger 27, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 27, cation/H+ exchanger 27 (.1) AT2G30240 88 / 1e-19 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1) AT5G58460 85 / 7e-19 ATCHX25 cation/H+ exchanger 25, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 25, cation/H+ exchanger 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017541 [exp] 341 / 9e-111 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10024717 [exp] 300 / 8e-100 AT4G23700 538 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10032332 [exp] 303 / 4e-98 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10030013 [exp] 188 / 6e-55 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 188 / 7e-55 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10025322 [exp] 171 / 6e-49 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10017540 [exp] 164 / 3e-46 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10040881 [exp] 105 / 1e-25 AT2G13620 572 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10004932 [exp] 104 / 2e-25 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G134900 [exp] 268 / 1e-84 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 253 / 3e-79 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G096320 [exp] 253 / 3e-79 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G005200 [exp] 248 / 4e-77 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G004800 [exp] 248 / 5e-77 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.006G054700 [exp] 192 / 2e-56 AT3G53720 982 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Potri.007G105200 [exp] 191 / 4e-56 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.004G131300 [exp] 115 / 3e-29 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123700 [exp] 97 / 7e-23 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.009G078000 [exp] 92 / 2e-21 AT5G37060 677 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10028747 pacid=23177096 polypeptide=Lus10028747 locus=Lus10028747.g ID=Lus10028747.BGIv1.0 annot-version=v1.0 ATGGCTCCTGGGAATGGAACATGTTATCCACCCATGAAAGCCACCTCCAATGGCGTCTTCCAGGGCGACAATCCACTCCACTACGCATTGCCTCTAGCGA TCCTCCAGATTTGCCTCGTCGTCGTCCTCACCCGTGCTCTTGCTTTCTTGCTCCGTCCTCTTCGCCAGCCTCGTGTGATTGCAGAGATCATTGGAGGGAT ATTGCTTGGTCCATCAGCTTTGGGAAGAAACCATTACTACCTCAACACCATTTTCCCATCAAAGAGTCTCACAGTCCTAGACACACTAGCCAACCTGGGA CTACTCTTCTTTCTCTTCCTGGTAGGACTGGAGTTGGACCCAAAGGCACTGAAAAGGACAGGCAACAAAGCTCTCAGCATCGCCGTTGCAGGGATCAGTC TCCCCTTCATCATGGGAATCGGGACCTCCGTTGTCCTCCGAGCAACCATTTCCAAAGGTGTAAGTGGCCCTCCGTTCCTAGTCTTCATGGGAGTCGCCCT ATCCATCACCGCCTTCCCAGTCCTCGCCAGAATTCTCGCAGAACTCAAGCTCCTGACCACCGAAGTTGGCCGGATGGCAATGTCGGCTGCGGCTGTGAAC GATGTCGCTGCATGGATCCTACTCGCCCTCGCCATTGCCCCCTCAGGAACAGGAAACTCGCCGTTAGTGGGCCTGGGGGGGGGGTCTTGCGGGCGTTCAT AG
AA sequence Show only first row Show all	>Lus10028747 pacid=23177096 polypeptide=Lus10028747 locus=Lus10028747.g ID=Lus10028747.BGIv1.0 annot-version=v1.0 MAPGNGTCYPPMKATSNGVFQGDNPLHYALPLAILQICLVVVLTRALAFLLRPLRQPRVIAEIIGGILLGPSALGRNHYYLNTIFPSKSLTVLDTLANLG LLFFLFLVGLELDPKALKRTGNKALSIAVAGISLPFIMGIGTSVVLRATISKGVSGPPFLVFMGVALSITAFPVLARILAELKLLTTEVGRMAMSAAAVN DVAAWILLALAIAPSGTGNSPLVGLGGGSCGRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10028747 [exp]	0	1
AT3G25940			TFIIB zinc-binding protein (.1...		Lus10015458 [exp]	8.5	0.8629
AT2G41520		TPR15	tetratricopeptide repeat 15, H...		Lus10031041 [exp]	10.6	0.7892
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10042035 [exp]	10.6	0.8443
AT4G08240			unknown protein		Lus10009881 [exp]	15.6	0.8628
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10033770 [exp]	23.0	0.8525
AT5G07950			unknown protein		Lus10021622 [exp]	28.9	0.8497
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10042725 [exp]	30.9	0.8498
AT2G17070			Arabidopsis protein of unknown...		Lus10020490 [exp]	35.9	0.8329
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10023226 [exp]	37.9	0.8458
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10038670 [exp]	50.8	0.7940

Compare expression of checked genes

Lus10028747 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.