Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41610 516 / 2e-178 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT4G23700 499 / 1e-170 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT3G17630 471 / 6e-160 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT1G64170 406 / 9e-135 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT2G13620 375 / 1e-122 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT3G53720 334 / 1e-106 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT1G05580 250 / 2e-75 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT2G31910 237 / 3e-70 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT1G06970 209 / 5e-60 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT2G30240 204 / 4e-58 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017541 [exp] 875 / 0 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10032332 [exp] 707 / 0 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10017540 [exp] 534 / 0 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10035312 [exp] 357 / 6e-115 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 349 / 4e-112 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10024717 [exp] 294 / 2e-94 AT4G23700 538 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10025322 [exp] 291 / 2e-90 AT3G53720 793 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10024414 [exp] 270 / 1e-85 AT3G53720 514 / 1e-175 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Lus10039138 [exp] 264 / 2e-79 AT2G13620 573 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G134900 [exp] 644 / 0 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 554 / 0 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G096320 [exp] 554 / 0 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G004800 [exp] 494 / 2e-168 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G005200 [exp] 493 / 2e-168 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.007G105200 [exp] 359 / 3e-116 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.006G054700 [exp] 353 / 1e-113 AT3G53720 982 / 0.0 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) Potri.007G111400 [exp] 282 / 1e-86 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) Potri.004G131300 [exp] 262 / 3e-79 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G189100 [exp] 246 / 1e-73 AT2G13620 595 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10028748 pacid=23177104 polypeptide=Lus10028748 locus=Lus10028748.g ID=Lus10028748.BGIv1.0 annot-version=v1.0 ATGCCTTTGCAGGAAGCTTTAGCTATTGGATTCCTGATGAACACTAAAGGTTTAGTGGAGCTCATTGTTCTCAACATTGGCAGAGACAGAAAGGTTCTGA ACGAGCAAACATTCTCAATCCTAGTTCTAATGGCGATATTCACGACATTCATGACAACTCCACTAGTAATGGCGGTATACAAACCTGCAAAGCGAGAATC GAAAACAGAATACAAGCACAGAACAATCGAGAGGAACGATCCAAACGACCAATTCCGGCTATTGGCATGCTTCCACTCTTCCAGGAACATACCTGGATTG ATCAATCTGATCGAAGCCTCTAGAGGAACTGAGAAGAGACAAGGTCTCTGCGTCTACGCTCTGCATCTAATGGAGCTATCGGAGCGTCCTTCAGCGATCC TCATGGTCCACAAGGCCAGGAAGAACGGACTCCCCTTCTGGAACAAGATCCAGCAATCCGATTCGAATCAGGTCGTCGTAGCGTTCGAGGCGTTCCGGCA GCTCAGCCGCGTGGTGATCCGGCCGATGACGGCGATCTCCGCCATCCACGGGACGCACGAGGACATCTGCGAGAGCGCGGAGAGAAAACGTGCGGCGATG ATCATCTTACCCTTTCATAAGCACCAGCGGCTCGACGGAACCCTAGAGACGACACGAACCGAGTTCCGCCACGTGAACAAGAAAGTCCTGGAGCGGGCGC CGTGCTCCGTTGCGATTCTGGTGGATCGGGGCTTCGGCGGGTCTACTCACGTGGCGGCCAGCAACGTGTCGTCGAGCATCACCGTGCTCTTTTTCGGCGG GAAAGATGACAGGGAGGCGTTAGCCTATGGGACGAGAATGGCGGAGCATCCGGGAATCAGCCTGACGGTGATCCGATACGCGGCGAGCCCCGAAAACACC GGAGATATCGTGACCGTTGATTTGAACGACGGAGGATCCGACGGGGTAACTGGGCTTTCGGATGACGAGTATTTGGCGGAGTTTAGGAAGAGGAGTAAAG AAGACGGGTCGATTCGTTACGAGGAGAGAGTGGTGAAGAATCCGGTGGAGACGACGGAGTCGATTCGAGGGTTCAGTAAGTGTAATTTGTTCCTGGTGGG GAGGATGCCCGAAGGTCCGGTGGCGGCGTGCCTGGGAGCGAAGATTGAGTGCGCCGAGCTTGGTCCGGTGGGCAATTTCTTGACGTCGACAGACTTTGTG ACTTCGGCATCGGTGTTGGTGGTGAAGCAGCACTCTACGCCGTCGACGCCGCGGCACAGCACGATGAGCTCCGGGAAAGTGGCGGAATCGCCGAAAATGG AGGCTTGA
AA sequence Show only first row Show all	>Lus10028748 pacid=23177104 polypeptide=Lus10028748 locus=Lus10028748.g ID=Lus10028748.BGIv1.0 annot-version=v1.0 MPLQEALAIGFLMNTKGLVELIVLNIGRDRKVLNEQTFSILVLMAIFTTFMTTPLVMAVYKPAKRESKTEYKHRTIERNDPNDQFRLLACFHSSRNIPGL INLIEASRGTEKRQGLCVYALHLMELSERPSAILMVHKARKNGLPFWNKIQQSDSNQVVVAFEAFRQLSRVVIRPMTAISAIHGTHEDICESAERKRAAM IILPFHKHQRLDGTLETTRTEFRHVNKKVLERAPCSVAILVDRGFGGSTHVAASNVSSSITVLFFGGKDDREALAYGTRMAEHPGISLTVIRYAASPENT GDIVTVDLNDGGSDGVTGLSDDEYLAEFRKRSKEDGSIRYEERVVKNPVETTESIRGFSKCNLFLVGRMPEGPVAACLGAKIECAELGPVGNFLTSTDFV TSASVLVVKQHSTPSTPRHSTMSSGKVAESPKMEA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10028748 [exp]	0	1
					Lus10004923 [exp]	8.7	0.8631
AT2G18470		AtPERK4, PERK4	proline-rich extensin-like rec...		Lus10041734 [exp]	10.6	0.8380
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10016810 [exp]	13.0	0.8876
					Lus10016269 [exp]	16.0	0.8557
AT2G18360			alpha/beta-Hydrolases superfam...		Lus10028302 [exp]	16.5	0.8183
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10032280 [exp]	18.9	0.8780
AT1G49410		TOM6	translocase of the outer mitoc...		Lus10007383 [exp]	20.3	0.8778
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10037668 [exp]	24.7	0.8696
AT5G62360			Plant invertase/pectin methyle...		Lus10032233 [exp]	25.3	0.8399
AT3G08880			unknown protein		Lus10012504 [exp]	26.8	0.8318

Compare expression of checked genes

Lus10028748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.