Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64160 214 / 4e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G23690 204 / 3e-67 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G11190 167 / 6e-53 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G11180 167 / 7e-53 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT4G11210 167 / 1e-52 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G22900 71 / 5e-15 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42500 69 / 2e-14 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT5G42510 68 / 3e-14 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT2G21100 63 / 2e-12 Disease resistance-responsive (dirigent-like protein) family protein (.1) AT1G58170 62 / 5e-12 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017539 [exp] 301 / 2e-105 AT1G64160 238 / 9e-81 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10017538 [exp] 175 / 1e-55 AT4G23690 187 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10032331 [exp] 169 / 2e-53 AT4G23690 187 / 5e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10024715 [exp] 168 / 6e-53 AT4G23690 186 / 2e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10024714 [exp] 167 / 1e-52 AT4G23690 186 / 3e-60 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034482 [exp] 73 / 2e-15 AT2G21100 182 / 8e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025063 [exp] 69 / 3e-14 AT2G21100 183 / 4e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10034479 [exp] 65 / 5e-13 AT2G21100 189 / 9e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Lus10025067 [exp] 65 / 6e-13 AT2G21100 214 / 3e-71 Disease resistance-responsive (dirigent-like protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G142401 [exp] 231 / 6e-78 AT1G64160 223 / 3e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G096560 [exp] 231 / 6e-78 AT1G64160 223 / 3e-75 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G134800 [exp] 174 / 5e-55 AT1G64160 188 / 4e-61 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.013G142501 [exp] 172 / 1e-54 AT1G64160 179 / 1e-57 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G096680 [exp] 172 / 2e-54 AT1G64160 178 / 2e-57 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.013G142702 [exp] 171 / 2e-54 AT4G23690 191 / 2e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G097001 [exp] 171 / 2e-54 AT4G23690 191 / 2e-62 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.003G134600 [exp] 169 / 2e-53 AT1G64160 182 / 5e-59 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.001G096800 [exp] 169 / 2e-53 AT1G64160 181 / 3e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1) Potri.013G142602 [exp] 169 / 2e-53 AT1G64160 181 / 3e-58 Disease resistance-responsive (dirigent-like protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0650 [flax] [poplar] AOC_barrel PF03018 [flax] [poplar] Dirigent Dirigent-like protein
Representative CDS sequence Show only first row Show all	>Lus10028749 pacid=23177319 polypeptide=Lus10028749 locus=Lus10028749.g ID=Lus10028749.BGIv1.0 annot-version=v1.0 ATGAAGCATTCTTCTTCTCATTCTTCATCTTGCCTTCCTTTTTTGTTAACAACAACCACCCCCATCTTCCTCCTCCTCCTCTCACTGATCTGTCCAGCTG CTGCCACGTGGCGGACGCCAACTCACCACCAGCATGGAAGAAATCCCAATAAGCCATGCAAGCAGCTGGTCCTCTACTACCACGACATCCTCTTCCATGG GAACGGCGACCAAGGGAACGCCACGTCAGCAGCGGCCGCCAACGCCACCAAGCTGGGAGACTACAAGTTCGGGATGCTGGTGGTGTTCGACGACCCCGTG ACGAAAGACGGGCACCTGAAGTCGAAGGCGGTGGCGCGTGCACAAGGGTTCTACTTCTACGACATGAAGAGCACGTACAACGCGTGGTTCGCCTACACGC TGGTGTTCAACTCGACGGAGCACAAGGGGACCATCAACATCATGGGAGCCGACATGATGTCGGAGAAGACCAGGGACCTCTCCGTCGTCGGGGGGACCGG GGATTTCTTCATGGCGCGTGGGATCGCGACTTTCCGTACGGACACTTTCCAGGGCGATAACTACTTCCGGTTGGAGATGGATATTAAGTTGTACGACTGT TATAAGTACTAG
AA sequence Show only first row Show all	>Lus10028749 pacid=23177319 polypeptide=Lus10028749 locus=Lus10028749.g ID=Lus10028749.BGIv1.0 annot-version=v1.0 MKHSSSHSSSCLPFLLTTTTPIFLLLLSLICPAAATWRTPTHHQHGRNPNKPCKQLVLYYHDILFHGNGDQGNATSAAAANATKLGDYKFGMLVVFDDPV TKDGHLKSKAVARAQGFYFYDMKSTYNAWFAYTLVFNSTEHKGTINIMGADMMSEKTRDLSVVGGTGDFFMARGIATFRTDTFQGDNYFRLEMDIKLYDC YKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64160			Disease resistance-responsive ...		Lus10028749 [exp]	0	1
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Lus10002868 [exp]	2.8	0.6749
					Lus10023538 [exp]	3.9	0.6736
AT4G35150			O-methyltransferase family pro...		Lus10012408 [exp]	6.8	0.6889
AT3G04950			unknown protein		Lus10022395 [exp]	7.2	0.6180
					Lus10024679 [exp]	12.7	0.6391
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10032323 [exp]	14.3	0.6416
AT3G07610		IBM1	increase in bonsai methylation...		Lus10004602 [exp]	18.0	0.5881
					Lus10011637 [exp]	19.1	0.6449
AT1G60630			Leucine-rich repeat protein ki...		Lus10019429 [exp]	24.4	0.6287
AT1G52190			Major facilitator superfamily ...		Lus10008539 [exp]	27.9	0.6226

Compare expression of checked genes

Lus10028749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.