Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60750 429 / 4e-151 CAAX amino terminal protease family protein (.1) AT1G14270 92 / 7e-21 CAAX amino terminal protease family protein (.1.2.3.4) AT2G20725 69 / 8e-13 CAAX amino terminal protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017536 [exp] 677 / 0 AT5G60750 422 / 2e-148 CAAX amino terminal protease family protein (.1) Lus10024708 [exp] 531 / 0 AT5G60750 444 / 2e-155 CAAX amino terminal protease family protein (.1) Lus10032326 [exp] 478 / 2e-169 AT5G60750 402 / 1e-139 CAAX amino terminal protease family protein (.1) Lus10036748 [exp] 91 / 3e-20 AT1G14270 400 / 6e-140 CAAX amino terminal protease family protein (.1.2.3.4) Lus10037179 [exp] 83 / 1e-17 AT1G14270 347 / 8e-121 CAAX amino terminal protease family protein (.1.2.3.4) Lus10032327 [exp] 71 / 3e-13 AT2G30070 635 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Lus10018585 [exp] 57 / 9e-09 AT2G20725 235 / 3e-76 CAAX amino terminal protease family protein (.1) Lus10039818 [exp] 50 / 8e-07 AT2G20725 210 / 5e-68 CAAX amino terminal protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G133800 [exp] 511 / 0 AT5G60750 461 / 6e-164 CAAX amino terminal protease family protein (.1) Potri.001G097500 [exp] 507 / 0 AT5G60750 460 / 2e-163 CAAX amino terminal protease family protein (.1) Potri.008G147600 [exp] 92 / 1e-20 AT1G14270 362 / 1e-124 CAAX amino terminal protease family protein (.1.2.3.4) Potri.019G101100 [exp] 68 / 9e-13 AT2G20725 224 / 5e-72 CAAX amino terminal protease family protein (.1) Potri.008G181400 [exp] 42 / 0.0005 AT3G26085 308 / 1e-104 CAAX amino terminal protease family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0472 [flax] [poplar] Peptidase_U PF02517 [flax] [poplar] CPBP CPBP intramembrane metalloprotease
Representative CDS sequence Show only first row Show all	>Lus10028751 pacid=23177326 polypeptide=Lus10028751 locus=Lus10028751.g ID=Lus10028751.BGIv1.0 annot-version=v1.0 ATGTTGAGCAATTGCTGCTCCCTTTCTCACCGCCCGGTTCTCCTCCCTGCTCTTTCCAGGCAGCAGCAGCAGTTCAGGGCTCTGAACCGGCCTGCCAAGT CATCTCTTTCTGTTACGAACACGCGGATCCTTGAACCAACAACTTCCAAGTTTCACAAGAATAAATGGAGGATTTCATGTTTTAGACATGAGGATTTCCC ACCTGCGAGTACGACTTCTGATGGCGTTGAGCACTTGCTTCCTGATGGGCCACTGAAGCCAGAACCTGGACTTACTAGTTCTACTCAGGATAGAAAGGAT TGGATAAGACAGGCAGTAGATGTGGTGCAGAGGGCAATTGGAAGTCGTTGGACTGTACCATGGGGGGCAGAGACTATAATCCAGGTAATGCTCCTCTGGG TTGTCTCGTTCTGGTTTATAGGATCCTGGATGGTACCTTTTGCAGCACATATAGCAGGTTTCAAATCTCTAACGTTCAGAGGACAAGCTTTATTCAGCCT TGTAACTGATGTCACAGAAGGCCTGGCTGGTATCGCAATCCTTCTGCGTTGCCTTTCAAGGTTTAGCCCCCTTTCATCTGATTGGTTTAGATTTAGTCTG AAAGGGACCTGGATGTTTGATGTGGCACTTGGATGCCTCATGTTTCCCCTCGTGAACCGGCTCTCACAATTCAATCTCAGCCTCCTCCCAATTCTTCCCG CCACACCAGTCACTCTCTCTAGCGTTGAGCAATCAATAGCAGCACGTGATCCGGTCGCGATGGCTCTTTATGCAGTAGTAGTATCGGTTTGCGCACCGGT GTGGGAGGAGATTGTCTTCCGGGGTTTCCTCCTACCGTCCTTGACAAAATACATGCCCGTATGGTGTGCAATACTAATGAGTGCGGTGGCCTTTGCGTTG GCGCATTTTAACGTACAGAGGATGCTGCCGCTTATATTTCTAGGAGTGGTGATGGGGGTTGTTTTTGCACGGTCGAGGAACTTGTTGCCGCCCATGCTTC TGCACAGCCTGTGGAATGGTTTTGTTTTCTTAGATCTGATGAAGTAA
AA sequence Show only first row Show all	>Lus10028751 pacid=23177326 polypeptide=Lus10028751 locus=Lus10028751.g ID=Lus10028751.BGIv1.0 annot-version=v1.0 MLSNCCSLSHRPVLLPALSRQQQQFRALNRPAKSSLSVTNTRILEPTTSKFHKNKWRISCFRHEDFPPASTTSDGVEHLLPDGPLKPEPGLTSSTQDRKD WIRQAVDVVQRAIGSRWTVPWGAETIIQVMLLWVVSFWFIGSWMVPFAAHIAGFKSLTFRGQALFSLVTDVTEGLAGIAILLRCLSRFSPLSSDWFRFSL KGTWMFDVALGCLMFPLVNRLSQFNLSLLPILPATPVTLSSVEQSIAARDPVAMALYAVVVSVCAPVWEEIVFRGFLLPSLTKYMPVWCAILMSAVAFAL AHFNVQRMLPLIFLGVVMGVVFARSRNLLPPMLLHSLWNGFVFLDLMK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60750			CAAX amino terminal protease f...		Lus10028751 [exp]	0	1
AT4G23820			Pectin lyase-like superfamily ...		Lus10032374 [exp]	2.0	0.8252
AT1G29120			Hydrolase-like protein family ...		Lus10001893 [exp]	6.9	0.7802
AT1G74530			unknown protein		Lus10023603 [exp]	7.1	0.7564
					Lus10033414 [exp]	10.5	0.7825
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10004321 [exp]	13.0	0.7867
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031781 [exp]	18.0	0.7697
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10027195 [exp]	18.2	0.7767
AT5G48500			unknown protein		Lus10009584 [exp]	20.4	0.7849
AT4G16650			O-fucosyltransferase family pr...		Lus10004729 [exp]	21.5	0.7645
AT3G27390			unknown protein		Lus10032110 [exp]	22.1	0.7867

Compare expression of checked genes

Lus10028751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.