Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35360 884 / 0 CAC2 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) AT1G03090 423 / 5e-135 MCCA methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) AT4G23630 303 / 1e-95 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT5G41600 301 / 4e-95 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) AT1G64090 295 / 8e-93 RTNLB3 Reticulan like protein B3 (.1.2) AT4G11220 282 / 7e-88 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT2G46170 263 / 7e-81 Reticulon family protein (.1.2) AT3G61560 254 / 2e-77 Reticulon family protein (.1.2) AT1G36160 221 / 1e-58 GSD1, PAS3, GK, EMB22, AT-ACC1, ACC1 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2) AT1G36180 216 / 2e-57 ACC2 acetyl-CoA carboxylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017534 [exp] 1046 / 0 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028196 [exp] 985 / 0 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042899 [exp] 916 / 0 AT5G35360 821 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042901 [exp] 550 / 0 AT5G35360 491 / 2e-171 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10042623 [exp] 422 / 1e-134 AT1G03090 1064 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Lus10017533 [exp] 339 / 2e-109 AT1G64090 303 / 9e-104 Reticulan like protein B3 (.1.2) Lus10032313 [exp] 315 / 7e-100 AT4G23630 318 / 1e-109 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10028199 [exp] 307 / 1e-98 AT5G35360 296 / 1e-99 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10038833 [exp] 285 / 2e-89 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G146300 [exp] 957 / 0 AT5G35360 911 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.006G078200 [exp] 952 / 0 AT5G35360 926 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.005G213300 [exp] 417 / 2e-132 AT1G03090 1099 / 0.0 methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.1), methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA) (.2) Potri.015G027300 [exp] 293 / 3e-92 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.001G097700 [exp] 290 / 7e-91 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.012G035600 [exp] 289 / 1e-90 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.003G133600 [exp] 286 / 1e-89 AT4G23630 284 / 8e-97 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.014G091200 [exp] 285 / 2e-89 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.002G165400 [exp] 266 / 5e-82 AT2G46170 311 / 1e-107 Reticulon family protein (.1.2) Potri.005G169100 [exp] 225 / 3e-60 AT1G36160 3800 / 0.0 PASTICCINO 3, GLOSSYHEAD 1, GURKE, EMBRYO DEFECTIVE 22, acetyl-CoA carboxylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF02785 [flax] [poplar] Biotin_carb_C Biotin carboxylase C-terminal domain CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon CL0179 [flax] [poplar] ATP-grasp PF02786 [flax] [poplar] CPSase_L_D2 Carbamoyl-phosphate synthase L chain, ATP binding domain CL0483 [flax] [poplar] PreATP-grasp PF00289 [flax] [poplar] Biotin_carb_N Biotin carboxylase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10028753 pacid=23177269 polypeptide=Lus10028753 locus=Lus10028753.g ID=Lus10028753.BGIv1.0 annot-version=v1.0 ATGACTGAGCACAAGGAAGAGTCACTGATGGATAAGATATCGGAGAAGATCCACGGAGGCGATGATTCTTCTTCTTCGTCTTCCGATTCCGATCACGACG ATAAGCCCAAGAAGTCGTCCTCTCCGGCTTCTCCTTCATCGATCAAGTCCAAAATCTATCGTCTCTTTGGACGTGAGCAGCCTGTTCACAAGGTTCTCGG TGGTGGCAAACCCGCCGATGTTTTCCTGTGGAGGAACAAGAAGATCTCGGCAGGAGTGCTTGGTGGCGCAACTGCTGCATGGGTTCTCTTTGAATTGCTC GAGTACCACCTTCTGACACTGGTTTGCCATGCTTTGATCCTCGCGTTGGCAGTTTTGTTTCTGTGGTCCAATGCCTCCACGTTTATCAACAAATCAACCC CGCATATTCCGCAGGTCCACATCCCTGAGGATGCAGTTCTGCAATTTGCTTCTGGACTTAGGTATGAGATCAACCGCGGGTTGGCTGCTCTTCGTGATAT AGCCTCAGGAAAGGACCTCAAAAAGTTCCTTGCTGTGATTGCTGGTTTATGGGTCCTATCAATCTTGGGGAGCTGTTGCAACTTCCTGACTCTGTTCTAT ATCGTATTCGTGCTTCTCCACACAGTGCCAGTCTTGTATGAGAAGTATGAAGATAAAGTAGATGCATTTGGGGAGAAGGCATGGATCGAGATCAAGAAGC AGTATGCAGTGTTCGACGAGAAGGTGCTAATTGGAGGGTATGTCGAGTGTCGGATGCAGATGAGGTTGGAAGTCGGGTATTTGGGGACACGGAAGTCCAA AGGAACAGTTAGTTCATGTGTTCTCACTGTTTCTCAGCTTAGAATGTCGAGACAGCTAAGTTCAAAGTTCCCACTTGGAGAGCTAGCTGTTCACTCTTTT TTGTGTGGTGTGAGACTTCCATTTCATCGAAACTCTCAGTGTCCCTCGACATTCACACTCCACCATCTCCAAACATCTTGGAAAACCATAGGCAAGCACA AGAAATCAAGAGTAGGAGGAATGATTGTACAGTCTGTACCTAAGCGAGACTGTACATCTGCTTCCTCGTCTGTAGATACCGAAGCTGAGAATCAGGCGGA GTGTGCAATCTCCCTTCCCCCAACTGTCCCTCGTTTCTATCGACCAATTTCTTCTTCACTCCTCAGTTTAATTCTTTCTATTCTCGCCATTATTAAACCC CCTGAAGCTCATTTTCCCTCTTTCGCTCACTCTCAATTTCAGCTGTCTCTTTATTCTGACTTTGGCATTGGAACTCGCATTCCGAGAGCTCAACGATTTG TCTACATACCCCGGTTTCCCTGCTTACTATCGGAGATGGAGGCCACATTGCCGGGTTGTAAATCAGTTACCTCCGTTCCTGGTTTAATTGTGAGAACAAC ACCAGGAATAAGAAGTTCACAATGTAGCCTTTTGGTGGGGACTAAGGTCAACTTTCCTAGACTAGGAGTTCATGCTGCTAAGGTTGCTCATAAAAGTAAT AAGAGAGGTGGAGCGCCACGTGTAACATGCCATGCAGAAAAGATTCTGGTCGCGAACAGAGGGGGAAGTGCTGTTCGTGTGATACGGACTGCCCACGAAT TAGGAATACCATGTGTTGCTGTTTACTCAACCATCGACAAGGATGCCCTTCACGTCAAATTGGCTGATGAATCAGTTTGTATCGGTGAAGCACCAAGCAA TCAGTCGTACTTAGTGATAGCCAATGTCTTATCTGCTGCTGTTAGTCGCCATTGTACAATGCTGCATCCTGGATATGGTTTTCTTGCTGAGAATGCCACA TTTGTAGAAATGTGCCGGGCACACGGGATAAATTTTATTGGACCCAATCCGGATAGCATCAAAACTATGGGTGATAAAGCCACTGCCAGAGAAACAATGA AGAATGCAGGAGTTCCAACTGTTCCAGGAAGTGATGGATTGTTGCAGAGCACAGAGGAAGCAATTAGGCTGGCTGAAGAAATAGGTTATCCTGTGATGAT CAAGGCAACGGCTGGTGGTGGTGGGCGTGGAATGCGTCTTGCTAAAGAACCAGAGGAATTTGTGAAGTTGCTTCAGCAAGCCAAGAGCGAGGCTGCTGCT GCATTTGGAAATGATGGAGTTTATTTAGAAAAATACATTCAAAATCCAAGGCACATCGAGTTCCAGGTCCTTGCAGATAAGTATGGTAATGTCATCCATT TTGGCGAGAGAGACTGTAGTATCCAGAGACGTAACCAGAAGCTTCTGGAAGAGGCTCCCTCCCCAGCACTGACCCCAGAGTTGAGGAAAGCCATGGGTGA TGCAGCAGTTGCAGCTGCCGCATCCATAGGGTACATTGGTGTGGGAACAGTGGAGTTCCTTCTGGATGAGAGGGGTTCCTTCTACTTCATGGAAATGAAT ACTCGTATCCAGGTTGAGCATCCTGTAACTGAAATGATTTCATCTGTGGACTTGATTGAGGAACAAATTAGAGTAGCTATGGGAGAAAAACTTCGTTATA AACAGGAAGAAATTGTGCTCAGAGGTCATTCAATCGAGTGCCGGATCAATGCAGAGGATGCATTTAAGGGATTTAGACCGGGACCAGGAAGAATAACAGC ATACTTGCCATCTGGAGGACCCTTTGTCAGAATGGACAGTCATATTTATCCAGATTATGTTGTCCCTCCAAGCTATGATTCTCTGCTTGGAAAGCTTATT GTTTGGGCCCCGACTAGAGAAAAGGCGATTGAGCGTATGAAGAGGGCCCTTAATGACACTATTATTACGGGAGTTCCTACAACAATTGATTATCATAAGT TGATCCTTGAGATTGAGGACTTCAAAACTGGAAACGTCGATACAGCATTCATTCCAAAGCACGAAGATGAATTACAAGCGCCAACCCAGATAGTGCCAGC AAACGGGATGGCCGCTTAA
AA sequence Show only first row Show all	>Lus10028753 pacid=23177269 polypeptide=Lus10028753 locus=Lus10028753.g ID=Lus10028753.BGIv1.0 annot-version=v1.0 MTEHKEESLMDKISEKIHGGDDSSSSSSDSDHDDKPKKSSSPASPSSIKSKIYRLFGREQPVHKVLGGGKPADVFLWRNKKISAGVLGGATAAWVLFELL EYHLLTLVCHALILALAVLFLWSNASTFINKSTPHIPQVHIPEDAVLQFASGLRYEINRGLAALRDIASGKDLKKFLAVIAGLWVLSILGSCCNFLTLFY IVFVLLHTVPVLYEKYEDKVDAFGEKAWIEIKKQYAVFDEKVLIGGYVECRMQMRLEVGYLGTRKSKGTVSSCVLTVSQLRMSRQLSSKFPLGELAVHSF LCGVRLPFHRNSQCPSTFTLHHLQTSWKTIGKHKKSRVGGMIVQSVPKRDCTSASSSVDTEAENQAECAISLPPTVPRFYRPISSSLLSLILSILAIIKP PEAHFPSFAHSQFQLSLYSDFGIGTRIPRAQRFVYIPRFPCLLSEMEATLPGCKSVTSVPGLIVRTTPGIRSSQCSLLVGTKVNFPRLGVHAAKVAHKSN KRGGAPRVTCHAEKILVANRGGSAVRVIRTAHELGIPCVAVYSTIDKDALHVKLADESVCIGEAPSNQSYLVIANVLSAAVSRHCTMLHPGYGFLAENAT FVEMCRAHGINFIGPNPDSIKTMGDKATARETMKNAGVPTVPGSDGLLQSTEEAIRLAEEIGYPVMIKATAGGGGRGMRLAKEPEEFVKLLQQAKSEAAA AFGNDGVYLEKYIQNPRHIEFQVLADKYGNVIHFGERDCSIQRRNQKLLEEAPSPALTPELRKAMGDAAVAAAASIGYIGVGTVEFLLDERGSFYFMEMN TRIQVEHPVTEMISSVDLIEEQIRVAMGEKLRYKQEEIVLRGHSIECRINAEDAFKGFRPGPGRITAYLPSGGPFVRMDSHIYPDYVVPPSYDSLLGKLI VWAPTREKAIERMKRALNDTIITGVPTTIDYHKLILEIEDFKTGNVDTAFIPKHEDELQAPTQIVPANGMAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028753 [exp]	0	1
AT5G35080			unknown protein		Lus10008819 [exp]	2.0	0.8508
AT3G22550			Protein of unknown function (D...		Lus10025770 [exp]	3.0	0.8041
AT1G78020			Protein of unknown function (D...		Lus10000693 [exp]	3.5	0.7812
AT1G05070			Protein of unknown function (D...		Lus10030034 [exp]	4.9	0.7671
AT4G20960			Cytidine/deoxycytidylate deami...		Lus10037850 [exp]	5.7	0.7589
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10024417 [exp]	6.2	0.8185
AT4G20280		TAF11	TBP-associated factor 11 (.1)		Lus10036241 [exp]	6.3	0.7603
AT1G12390			Cornichon family protein (.1)		Lus10028906 [exp]	10.4	0.7792
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Lus10011641 [exp]	12.4	0.7759
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10034131 [exp]	14.1	0.7381

Compare expression of checked genes

Lus10028753 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.