Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64080 100 / 1e-22 MAKR2 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017532 [exp] 454 / 6e-157 AT1G64080 175 / 1e-49 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G133500 [exp] 218 / 2e-65 AT1G64080 147 / 2e-39 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein Potri.001G098000 [exp] 203 / 8e-60 AT1G64080 145 / 8e-39 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein Potri.015G027500 [exp] 95 / 3e-21 AT5G52870 90 / 4e-20 MEMBRANE-ASSOCIATED KINASE REGULATOR 5, unknown protein Potri.012G035700 [exp] 80 / 3e-16 AT5G52870 115 / 2e-29 MEMBRANE-ASSOCIATED KINASE REGULATOR 5, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10028754 pacid=23177262 polypeptide=Lus10028754 locus=Lus10028754.g ID=Lus10028754.BGIv1.0 annot-version=v1.0 ATGGAAGCTTTCACCTTACTCAAATACTGGCGCGGCGGTGGTGCTGCCTCCTCCATCCCCATTCCTCCTCCTCCTCCACCCGTCACTGGTTCTCGCCACG CAACCACCATTTTTACTTCCACTAACTCACATGACAATGGCACTGACACGGACAACGAAGAAGATGCCGCAGGTGGGGATGATGGGTCTTTCTTCGACTT GGAGTTCTCCCTCGGAGATGACGTCACCGCCGACGATGACGGCGGAAAGGGCGATGTTGACGATTCCCAAGGAGATTGTGCGGACGACGGAGATAGGGAG TTTGATTTCACCCTCTCCTCCTCCTGCTCGGCTTCCAGTTCCAACAACGACCATGCCGACCTAACCACCACCACCATTGCTATTTCCCCTTCTTCTGACG AAATGTTCGGTCAATTGGTGCCAATGATGGACTCTTCCGACGCATTCAACCCTAAATCTCAGAGGATTCCCGTCTCCCTCCTCAAATCCGCCACCAAATT CCGTGTTTTCCTTTTGGGGTTCAAGAAGTCCAACTCCAAGGCCAACAACAACAACCCAGTTGCCCAGGAGGACAACAAAATCAGCGAGGTCAGATCCACT GATTCCGCCGGAGATGCAGGGCCGGAAAGCGAGGACGATGAGAGCGGGAAGCAGAGCAAGCCTTTCACTGTCAAGTTCAAAGTCGAGGAAGTTCCTATTG TGTCTCTTTTCACCAGCGAAAACAGTAGCAGCAGCAGCAGCAGCAGTAATAAGTCATCTTCCCCTATGGACAACGCGGACAACACTACTTCCCCGGCGGC GGCGGCTGCTGCCTCCGACGAGAGGCAGAGGTTCTCGAAGGAGGCATTGCAAAAGTACCTAAAGAAAGTGAAGCCTCTCTACGTCCGCGTTTCCAAGCGG TATGGGGAGAAACTGAGATTCACCTCCTCCTCAGGTCAACTGACGTTGACCTCATCCGCCGTCAATAAAGCCGGTGGTCATATCACTCTCAAGTCTTCGC CGTCGATATCTACAATGTCCGCGGAGAAGATTCAGCTGGAAGCTGTAGCGGAGAAGAGTGAAGTTCATCATCAGGTGACGAACACCACCAAGCAGGTCGG AGCAAAACAGGGGAATTTGCAGGCGGGACTTAGGGTAGTGTGCAAACACTTGGGGAAAAGCCGATCGGCATCTTCGGCTGCGGTGGCAGCGGCTCCTTCT CCTCCGTCATCCAATGCTGCGGCGTCGCAGAGGAGAGACGACTCGTTGTTGCAGCAGCAGGATGGGATTCAGAGCGCCATTCTTCACTGCAAGAGATCGT TCAATACGTCGCGAGATTCAGAGTATTCAAGGAAGGTGTGGGACACTTCACAGGAGAAATCCACTGAATCTTCGGCAAACGACGATGGGGAAACATCAAG TGGTTAA
AA sequence Show only first row Show all	>Lus10028754 pacid=23177262 polypeptide=Lus10028754 locus=Lus10028754.g ID=Lus10028754.BGIv1.0 annot-version=v1.0 MEAFTLLKYWRGGGAASSIPIPPPPPPVTGSRHATTIFTSTNSHDNGTDTDNEEDAAGGDDGSFFDLEFSLGDDVTADDDGGKGDVDDSQGDCADDGDRE FDFTLSSSCSASSSNNDHADLTTTTIAISPSSDEMFGQLVPMMDSSDAFNPKSQRIPVSLLKSATKFRVFLLGFKKSNSKANNNNPVAQEDNKISEVRST DSAGDAGPESEDDESGKQSKPFTVKFKVEEVPIVSLFTSENSSSSSSSSNKSSSPMDNADNTTSPAAAAAASDERQRFSKEALQKYLKKVKPLYVRVSKR YGEKLRFTSSSGQLTLTSSAVNKAGGHITLKSSPSISTMSAEKIQLEAVAEKSEVHHQVTNTTKQVGAKQGNLQAGLRVVCKHLGKSRSASSAAVAAAPS PPSSNAAASQRRDDSLLQQQDGIQSAILHCKRSFNTSRDSEYSRKVWDTSQEKSTESSANDDGETSSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10028754 [exp]	0	1
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10033441 [exp]	1.0	0.9902
AT5G48090		ELP1	EDM2-like protein1 (.1.2)		Lus10002268 [exp]	1.4	0.9898
AT3G60670			PLATZ transcription factor fam...		Lus10015881 [exp]	1.7	0.9877
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Lus10038875 [exp]	2.2	0.9826
					Lus10000191 [exp]	5.5	0.9760
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	5.5	0.9802
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Lus10026432 [exp]	5.8	0.9677
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	6.0	0.9843
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10017532 [exp]	6.3	0.9662
AT3G58690			Protein kinase superfamily pro...		Lus10017647 [exp]	6.5	0.9641

Compare expression of checked genes

Lus10028754 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.