Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64060 1401 / 0 RBOHAP108, ATRBOHF ,ATRBOH F ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) AT4G11230 1018 / 0 Riboflavin synthase-like superfamily protein (.1) AT1G19230 920 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT5G47910 910 / 0 ATRBOHD, RBOHD respiratory burst oxidase homologue D (.1) AT5G51060 902 / 0 ATRBOHC, RHD2 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) AT1G09090 896 / 0 ATRBOHB-BETA, ATRBOHB respiratory burst oxidase homolog B (.1.2) AT5G07390 860 / 0 ATRBOHA respiratory burst oxidase homolog A (.1.2) AT4G25090 844 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT5G60010 809 / 0 ferric reductase-like transmembrane component family protein (.1) AT3G45810 766 / 0 ferric reductase-like transmembrane component family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017527 [exp] 1644 / 0 AT1G64060 1445 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10032308 [exp] 1510 / 0 AT1G64060 1467 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10024683 [exp] 1266 / 0 AT5G60010 742 / 0.0 ferric reductase-like transmembrane component family protein (.1) Lus10033423 [exp] 979 / 0 AT1G19230 1165 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Lus10034890 [exp] 965 / 0 AT1G19230 1181 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Lus10029896 [exp] 942 / 0 AT1G09090 1158 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10043017 [exp] 927 / 0 AT5G47910 1276 / 0.0 respiratory burst oxidase homologue D (.1) Lus10032517 [exp] 919 / 0 AT5G47910 1273 / 0.0 respiratory burst oxidase homologue D (.1) Lus10022434 [exp] 918 / 0 AT5G51060 1276 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G133300 [exp] 1489 / 0 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.001G098300 [exp] 1477 / 0 AT1G64060 1476 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.006G137300 [exp] 1016 / 0 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Potri.005G026200 [exp] 941 / 0 AT1G09090 1165 / 0.0 respiratory burst oxidase homolog B (.1.2) Potri.003G159800 [exp] 941 / 0 AT5G47910 1299 / 0.0 respiratory burst oxidase homologue D (.1) Potri.012G111600 [exp] 934 / 0 AT5G51060 1255 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.015G109800 [exp] 923 / 0 AT5G51060 1253 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.001G070900 [exp] 919 / 0 AT5G47910 1227 / 0.0 respiratory burst oxidase homologue D (.1) Potri.006G097200 [exp] 788 / 0 AT5G60010 1078 / 0.0 ferric reductase-like transmembrane component family protein (.1) Potri.016G112200 [exp] 751 / 0 AT5G60010 1052 / 0.0 ferric reductase-like transmembrane component family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF08022 [flax] [poplar] FAD_binding_8 FAD-binding domain CL0220 [flax] [poplar] EF_hand PF08414 [flax] [poplar] NADPH_Ox Respiratory burst NADPH oxidase CL0091 [flax] [poplar] NAD_Ferredoxin PF08030 [flax] [poplar] NAD_binding_6 Ferric reductase NAD binding domain CL0328 [flax] [poplar] 2heme_cytochrom PF01794 [flax] [poplar] Ferric_reduct Ferric reductase like transmembrane component
Representative CDS sequence Show only first row Show all	>Lus10028755 pacid=23177288 polypeptide=Lus10028755 locus=Lus10028755.g ID=Lus10028755.BGIv1.0 annot-version=v1.0 ATGAGGCACGAGAGGCGGTGGGGATCCGATTCTGTGCCGGCAAGGGGGGCGACGGCTAGCAGCAGCAGCGCAGGGACGTCTCGGGGGAGTTCGATGACAG GGGAGGAGTTCGTCGAGGTCACGCTTGATTTGCAGGACGATGACACGATTATCCTCAGGAGCGTTGAGCCGGCGACAGTCATTAACATCGCCGGCGGGAG TGATAGTGAAGGCGGAAGGGAGTTGGTTGCAGATAATTCAACTCCTGATTCGGCTCCGGCTTCCAGATCGCCGACGATCAAGCGGAGCTCGTCAAACAAG CTGCGGCAATTCTCGCACGAGCTGAAGGTGGAGGCGGTGGCGAAGGCAAGGCAGTTCTCTCAGGAGCTAAAAGCGGAGCTCAGGAGGTTCTCCTGGAGCC AAGGACTGTCATCTCGCAATTCGCCAATGAACAATAATAATGGCGGTGCAGCTGCTGGATTCGATTCGGCGTTGGCTGCTCGAGCTCTGAGGAGGCAGCG AGCTCAGCTCGATCGGACCAGGTCCGGAGCTCAGAAGGCGCTTCGCGGTCTCAAATTCATCAGTAACAGAAAATCGCAGGCCGCTGTGGATGCGTGGAAC GAAGTCCATAGCAACTTCGAGAAGCTTGCAAAGGACGGTTATCTCTACCGCGCCGATTTCGCACAATGCATAGGGATGAAGGACTCCAAGGAGTTTGCAG TGGAACTGTTCGACGCATTGGGGAGGAGAAGAAGGCTGAAGGTGGAGAAGATTAGCAGGGACGAGCTTTACGAGTTCTGGTCACAAATCACCGATGACAG CTTCGATTCACGCCTCCAGATCTTCTTCGACATGGTAGACAAGAATGAAGATGGCAGAATTACAGAGGAAGAAGTAAAAGAGATTATTATGTTGAGTGCC TCCGCAAACAAATTATCCAGATTGAAGGAACAGGCAGAGGAATATGCAGCACTGATCATGGAAGAGTTGGACCCCGAAAGACTTGGCTACATCGAGTTAT GGCAACTGGAAACGCTTCTTCTCCAGAAGGACACGTATCTAAACTACAGTCAAGCACTGAGCTACACGAGCCAAGCACTGAGCCAGAACTTACAAGGGCT AAGAAGGCGAAGTCCAATCAAGCGGATGAGCACAAAGTTGGTCTACTTTCTGGAAGAGAACTGGAAAAGAATCTGGGTGGTGTCACTATGGATCATGATC ATGGTCGGGCTATTCACATGGAAGTTTCATCAGTACAAGCAGAAAGCCGCTTTCAAGGTTATGGGTTACTGTCTCCTCACGGCAAAAGGCGCAGCGGAGA CTTTGAAGTTCAACATGGCACTCATTCTCCTCCCAGTCTGTAGAAACACCATCACTCGCCTCAGGTCCACACGGCTGGCTTTTCTTGTGCCTTTCGACGA CAACATCAACTTCCACAAGACTATTGCGACAGCAATCGTGATTGGTGTTATTCTGCACGTTGGAAATCACCTCGCCTGCGATTTTCCAAGGCTCGAGGGC TCGTCTCTGCAGGACTACAATCGGTACCTTAGAAATGACTTTGGACACCATAAACCCAGTTACTGGAAACTGGTTAGAGGGCCAGAAGGTGTCACAGGGA TTCTGATGGTGATTTGCATGATAATTGCGTTTACACTGGCAACCAGATGGTTCAGGCGTAGCCTTATTAAACTACCTAAACCATTTGACAGACTCACAGG ATTCAATGCCTTTTGGTATTCACACCATCTATTCGTCAGCGTCTATATCTTGCTCGTCGTCCATGGAGAATACCTCTACTTGGTCCATCACTGGTATAAA AAAACGACCTGGATGTACCTCTCTGTTCCTGTGTTTTTGTACGCTGGAGAAAGAGCTCTCAGGTTCTTCCGCTCTGGCTCCCATACAGTCCGGCTATTGA AGGTTGCAATTTATCCTGGAAATGTGCTGACCTTAAAAATTTCCAAGCCTCCTCAGTTCCGGTACAAGAGTGGGCAGTACATGCACCCATTTTCCATCAC TTCTGCTCCCGGGGATGACTACCTTAGCGTACACATTCGGCAGTTAGGCGACTGGACACAAGAACTCAAAAGGGTATTCTCCGAGGCGTGCGAGCGCCCA GTTTCTGGGAAAAGCGGCCTTCTCAGAGCTGATGAAACCACCAAGAAAAGTTTGCCAAAGCTGTTAATAGATGGTCCTTATGGTGCCCCAGCGCAAGACT ACCGGAAATATGATGTCTTGTTAGTTGTCGGTCTCGGAATCGGGGCAACGCCTTTCATCAGCATTCTCAAAGACTTGCAAAACAACATCGTGACGATGGA GGAGCAAGCGGATTCACTAACTGATGTCAACAGAGCATCAGAACAGAGCTTTGATGCCACGAGACGGAAAAAGGCTTTGAAGACCACGAATGCTTACTTC TACTGGGTCACGAGGGAGCAAGGCTCGTTCGATTGGTTCAAAGGGGTGATGAACGAAATAGCGGATCATGATCAGAGGGGGGTCATTGAGATGCACAATT ACTTAACCAGCGTATACGAGGAAGGCGATGCCAGATCAACCCTCATTACCATGGTCCAAGCCTTAAACCATGCCAAGAACGGGGTGGACGTTGTCTCCGG CACCACTGTACGAACCCATTTTGCGAGGCCGAACTGGAAAAAGGTTCTTTCCAAACTGAGTTCCAAGCACTGTAATGCAAGGATAGGGGTGTTCTACTGT GGAGCTCCAGTTCTGGCGAAAGAACTGGGGAAGCTGTGCTACGAATTTAATCAAAAGGGTTCTACCAAGTTTGAGTTCCACAAGGAGCATTTCTAA
AA sequence Show only first row Show all	>Lus10028755 pacid=23177288 polypeptide=Lus10028755 locus=Lus10028755.g ID=Lus10028755.BGIv1.0 annot-version=v1.0 MRHERRWGSDSVPARGATASSSSAGTSRGSSMTGEEFVEVTLDLQDDDTIILRSVEPATVINIAGGSDSEGGRELVADNSTPDSAPASRSPTIKRSSSNK LRQFSHELKVEAVAKARQFSQELKAELRRFSWSQGLSSRNSPMNNNNGGAAAGFDSALAARALRRQRAQLDRTRSGAQKALRGLKFISNRKSQAAVDAWN EVHSNFEKLAKDGYLYRADFAQCIGMKDSKEFAVELFDALGRRRRLKVEKISRDELYEFWSQITDDSFDSRLQIFFDMVDKNEDGRITEEEVKEIIMLSA SANKLSRLKEQAEEYAALIMEELDPERLGYIELWQLETLLLQKDTYLNYSQALSYTSQALSQNLQGLRRRSPIKRMSTKLVYFLEENWKRIWVVSLWIMI MVGLFTWKFHQYKQKAAFKVMGYCLLTAKGAAETLKFNMALILLPVCRNTITRLRSTRLAFLVPFDDNINFHKTIATAIVIGVILHVGNHLACDFPRLEG SSLQDYNRYLRNDFGHHKPSYWKLVRGPEGVTGILMVICMIIAFTLATRWFRRSLIKLPKPFDRLTGFNAFWYSHHLFVSVYILLVVHGEYLYLVHHWYK KTTWMYLSVPVFLYAGERALRFFRSGSHTVRLLKVAIYPGNVLTLKISKPPQFRYKSGQYMHPFSITSAPGDDYLSVHIRQLGDWTQELKRVFSEACERP VSGKSGLLRADETTKKSLPKLLIDGPYGAPAQDYRKYDVLLVVGLGIGATPFISILKDLQNNIVTMEEQADSLTDVNRASEQSFDATRRKKALKTTNAYF YWVTREQGSFDWFKGVMNEIADHDQRGVIEMHNYLTSVYEEGDARSTLITMVQALNHAKNGVDVVSGTTVRTHFARPNWKKVLSKLSSKHCNARIGVFYC GAPVLAKELGKLCYEFNQKGSTKFEFHKEHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10028755 [exp]	0	1
AT3G51380		IQD20	IQ-domain 20 (.1)		Lus10041844 [exp]	1.4	0.8107
AT2G34930			disease resistance family prot...		Lus10024737 [exp]	1.7	0.8050
AT2G38010			Neutral/alkaline non-lysosomal...		Lus10017188 [exp]	4.1	0.8166
					Lus10026392 [exp]	7.3	0.7648
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10017652 [exp]	10.9	0.7636
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10012801 [exp]	13.4	0.6501
AT4G19670			RING/U-box superfamily protein...		Lus10018293 [exp]	15.2	0.7923
AT3G47570			Leucine-rich repeat protein ki...		Lus10030847 [exp]	17.0	0.7530
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10005644 [exp]	17.0	0.6926
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10011437 [exp]	18.3	0.7688

Compare expression of checked genes

Lus10028755 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.