Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41590 194 / 5e-62 Protein of unknown function (DUF567) (.1) AT2G38640 151 / 2e-45 Protein of unknown function (DUF567) (.1) AT1G80120 110 / 2e-29 Protein of unknown function (DUF567) (.1) AT3G15810 90 / 2e-21 Protein of unknown function (DUF567) (.1) AT3G14260 87 / 2e-20 Protein of unknown function (DUF567) (.1) AT1G63410 68 / 2e-13 Protein of unknown function (DUF567) (.1) AT1G53880 69 / 3e-13 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53900 69 / 3e-13 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1) AT1G53890 67 / 3e-13 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2), Protein of unknown function (DUF567) (.3) AT1G53870 67 / 3e-13 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017526 [exp] 494 / 9e-180 AT5G41590 194 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10007423 [exp] 154 / 2e-46 AT2G38640 187 / 4e-60 Protein of unknown function (DUF567) (.1) Lus10010681 [exp] 145 / 5e-43 AT2G38640 184 / 6e-59 Protein of unknown function (DUF567) (.1) Lus10016666 [exp] 101 / 1e-25 AT3G15810 265 / 5e-90 Protein of unknown function (DUF567) (.1) Lus10038097 [exp] 98 / 2e-24 AT3G15810 216 / 8e-71 Protein of unknown function (DUF567) (.1) Lus10032602 [exp] 85 / 2e-19 AT3G15810 211 / 5e-69 Protein of unknown function (DUF567) (.1) Lus10007118 [exp] 74 / 8e-16 AT3G15810 191 / 4e-62 Protein of unknown function (DUF567) (.1) Lus10001484 [exp] 74 / 8e-16 AT3G14260 137 / 5e-40 Protein of unknown function (DUF567) (.1) Lus10008485 [exp] 71 / 2e-14 AT3G14260 132 / 4e-38 Protein of unknown function (DUF567) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G133200 [exp] 222 / 7e-73 AT5G41590 207 / 1e-67 Protein of unknown function (DUF567) (.1) Potri.001G098400 [exp] 222 / 9e-73 AT5G41590 201 / 3e-65 Protein of unknown function (DUF567) (.1) Potri.006G113400 [exp] 150 / 1e-44 AT2G38640 214 / 5e-71 Protein of unknown function (DUF567) (.1) Potri.016G143000 [exp] 145 / 8e-43 AT2G38640 214 / 1e-70 Protein of unknown function (DUF567) (.1) Potri.001G192000 [exp] 97 / 2e-24 AT3G15810 281 / 5e-97 Protein of unknown function (DUF567) (.1) Potri.003G032500 [exp] 87 / 9e-21 AT3G15810 264 / 2e-90 Protein of unknown function (DUF567) (.1) Potri.001G106300 [exp] 87 / 1e-20 AT1G63410 132 / 8e-39 Protein of unknown function (DUF567) (.1) Potri.006G113800 [exp] 86 / 5e-20 AT1G80120 112 / 3e-30 Protein of unknown function (DUF567) (.1) Potri.006G067000 [exp] 86 / 6e-20 AT3G15810 229 / 1e-76 Protein of unknown function (DUF567) (.1) Potri.016G143500 [exp] 86 / 9e-20 AT1G80120 105 / 7e-28 Protein of unknown function (DUF567) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10028756 pacid=23177167 polypeptide=Lus10028756 locus=Lus10028756.g ID=Lus10028756.BGIv1.0 annot-version=v1.0 ATGTTCTTCAATTTCAAATCTTGGTCGAAAACTGTGTACGACGAGGAATTCGATGAGCCAGATGCTGCAGTGGATCAGGAAAAGCAATTGCAATTACCAA TAGCAGAAGATCATGGCAAGGTTCCGCCGCCGGAGAGTACAAGCGACACTTCCGCCGACGGCGGAATCAGCGGGTGGTCGACGTCCTTCACGGTGTGGAG GAAGTCTCTCGTGATGAACTGCAACGGATTCACGGTGATAAACGCCGACGGCGATCTCGTCTACCGTGTGGATAATTACTGTTGCCGCCCCGAGGAAATC ACCCTCATGGACGCCGCCGGGAACTCTGTACTCACATTGCTTCACAACACTAAGAGGCTTGGGCTGGTGGATAGCTGGCTGGTGTACGAAGGAGACGCGG AGGCGGCGGTGGGAGGGCATATTCCGGCGACGGCGGAGACGGTGAAGTACGTGCCGAAGAAGCCGATCTGGTGCGTGAAGAAGCAGAAGAATCTTTTACA GACGCAGGGGAGCAACGGGAACAGTGTTCTGGCGTATGTGTACAGGGGGAGTTCGGGGAAGAGGGACTATTCGTACGCCATCGAAGGATCGTACGGACAG AGATCTTGCAAGGTAGTGGAGTACGAATCAAGGAAGGAGGTGGCGGAGATACGGCAGAAGGAGGCGGCGATCGGAGGCGTTTCGCTGGGGGCTGAAGTTT TCGTTTTGTCTATACAGTCCGGGTTCGATTCCGGATTCGCCATGGCTCTGGTTTTGCTTCTAGATCAGATGTTTTCCTGA
AA sequence Show only first row Show all	>Lus10028756 pacid=23177167 polypeptide=Lus10028756 locus=Lus10028756.g ID=Lus10028756.BGIv1.0 annot-version=v1.0 MFFNFKSWSKTVYDEEFDEPDAAVDQEKQLQLPIAEDHGKVPPPESTSDTSADGGISGWSTSFTVWRKSLVMNCNGFTVINADGDLVYRVDNYCCRPEEI TLMDAAGNSVLTLLHNTKRLGLVDSWLVYEGDAEAAVGGHIPATAETVKYVPKKPIWCVKKQKNLLQTQGSNGNSVLAYVYRGSSGKRDYSYAIEGSYGQ RSCKVVEYESRKEVAEIRQKEAAIGGVSLGAEVFVLSIQSGFDSGFAMALVLLLDQMFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41590			Protein of unknown function (D...		Lus10028756 [exp]	0	1
AT5G08030		AtGDPD6	glycerophosphodiester phosphod...		Lus10040516 [exp]	4.0	0.8143
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Lus10030365 [exp]	7.1	0.7207
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10018595 [exp]	13.0	0.7349
AT5G06130			chaperone protein dnaJ-related...		Lus10022688 [exp]	15.7	0.7619
AT1G62960		ACS10	ACC synthase 10 (.1)		Lus10006676 [exp]	37.8	0.7064
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Lus10016778 [exp]	39.6	0.6633
					Lus10013906 [exp]	73.0	0.6895
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020950 [exp]	78.7	0.6460
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10008439 [exp]	89.6	0.6634
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10008163 [exp]	95.0	0.6675

Compare expression of checked genes

Lus10028756 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.