Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09740 282 / 1e-93 ATGH9B14 glycosyl hydrolase 9B14 (.1) AT4G23560 281 / 2e-93 ATGH9B15 glycosyl hydrolase 9B15 (.1) AT1G02800 216 / 7e-68 ATCEL2 cellulase 2 (.1) AT4G02290 214 / 9e-67 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT3G43860 209 / 4e-65 ATGH9A4 glycosyl hydrolase 9A4 (.1) AT4G39010 207 / 2e-64 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT2G32990 203 / 9e-63 ATGH9B8 glycosyl hydrolase 9B8 (.1) AT4G11050 203 / 6e-62 ATGH9C3 glycosyl hydrolase 9C3 (.1) AT1G48930 203 / 7e-62 ATGH9C1 glycosyl hydrolase 9C1 (.1) AT1G70710 199 / 2e-61 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017525 [exp] 380 / 6e-132 AT4G09740 645 / 0.0 glycosyl hydrolase 9B14 (.1) Lus10010307 [exp] 219 / 6e-69 AT4G02290 493 / 2e-171 glycosyl hydrolase 9B13 (.1) Lus10008208 [exp] 213 / 1e-66 AT4G02290 812 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10013418 [exp] 209 / 1e-65 AT4G02290 625 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10038075 [exp] 208 / 7e-65 AT3G43860 686 / 0.0 glycosyl hydrolase 9A4 (.1) Lus10009794 [exp] 207 / 2e-64 AT3G43860 684 / 0.0 glycosyl hydrolase 9A4 (.1) Lus10009724 [exp] 206 / 9e-64 AT2G32990 693 / 0.0 glycosyl hydrolase 9B8 (.1) Lus10017402 [exp] 206 / 3e-63 AT1G48930 746 / 0.0 glycosyl hydrolase 9C1 (.1) Lus10038223 [exp] 202 / 2e-62 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G098800 [exp] 305 / 3e-102 AT4G09740 669 / 0.0 glycosyl hydrolase 9B14 (.1) Potri.002G225200 [exp] 211 / 7e-68 AT2G32990 465 / 2e-163 glycosyl hydrolase 9B8 (.1) Potri.002G202400 [exp] 214 / 9e-67 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 213 / 2e-66 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G083200 [exp] 211 / 5e-66 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.006G219700 [exp] 210 / 1e-65 AT3G43860 689 / 0.0 glycosyl hydrolase 9A4 (.1) Potri.009G123900 [exp] 207 / 3e-64 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.014G157600 [exp] 204 / 3e-63 AT2G32990 800 / 0.0 glycosyl hydrolase 9B8 (.1) Potri.007G071200 [exp] 206 / 5e-63 AT1G48930 850 / 0.0 glycosyl hydrolase 9C1 (.1) Potri.001G092200 [exp] 206 / 6e-63 AT1G64390 951 / 0.0 glycosyl hydrolase 9C2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10028757 pacid=23177193 polypeptide=Lus10028757 locus=Lus10028757.g ID=Lus10028757.BGIv1.0 annot-version=v1.0 ATGATTTTGGCAGGTGAATTGGCGGGAGGGTATTATGATGCTGGGGACAATGTGAAATTCGGGTGGACAATGTCATACACGGTGATGCTGTTGAGTTGGG CTGCCGTCGAGTACCAGCAAGAAATTACATCCGCCGGGAAAATGGGCAGCCTCCGCCAATCCATCCGCTGGGCCACCGATTTCCTCCTTCAATCCCACAC TTCCTCCACCACCTTCTACACTCAGGTCGGTGATGGGAATGCGGATCACAGTTGCTGGGAAAGGCCAGAGGACATGGACACACCTCGCACCCTTTACAAG ATCACTAGGGATGATCCTGGCTCTGCAGCTGCGGCCGAGGCTGCTGCTGCACTCTCCGCTGCTTCTATCGTCTTCAAATCTGTTGATTCTGCTTATTCCT CCACGCTCCTTCAACATTCCAGATCACTCTTCCAGTTTGCGGACACGTATAGGGCTTCTTACCGTGCTTCCTGCCCTTTCTACTGCTCTTACTCTGGCTA CCAGGATGAGTTGTTGTGCGGTGCAAGTTGGCTGTACGAGGCAACTGGGGAATCAAGTTACCTCAGCTATGTCACTACAAACCAAGGCTGGAGTGGCTGT GTTTCCGAGTTCAGTTGGGATAATAAACTTGCTGGAGTTCAGACTTTATAG
AA sequence Show only first row Show all	>Lus10028757 pacid=23177193 polypeptide=Lus10028757 locus=Lus10028757.g ID=Lus10028757.BGIv1.0 annot-version=v1.0 MILAGELAGGYYDAGDNVKFGWTMSYTVMLLSWAAVEYQQEITSAGKMGSLRQSIRWATDFLLQSHTSSTTFYTQVGDGNADHSCWERPEDMDTPRTLYK ITRDDPGSAAAAEAAAALSAASIVFKSVDSAYSSTLLQHSRSLFQFADTYRASYRASCPFYCSYSGYQDELLCGASWLYEATGESSYLSYVTTNQGWSGC VSEFSWDNKLAGVQTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23560		ATGH9B15	glycosyl hydrolase 9B15 (.1)		Lus10028757 [exp]	0	1

Compare expression of checked genes

Lus10028757 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.