Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63970 290 / 2e-96 MECPS, ISPF 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, isoprenoid F (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017522 [exp] 405 / 9e-142 AT1G63970 310 / 5e-108 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, isoprenoid F (.1.2) Lus10007551 [exp] 211 / 3e-63 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G099300 [exp] 322 / 3e-109 AT1G63970 321 / 4e-112 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, isoprenoid F (.1.2) Potri.003G132400 [exp] 320 / 4e-108 AT1G63970 326 / 4e-114 2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, isoprenoid F (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02542 [flax] [poplar] YgbB YgbB family
Representative CDS sequence Show only first row Show all	>Lus10028759 pacid=23177244 polypeptide=Lus10028759 locus=Lus10028759.g ID=Lus10028759.BGIv1.0 annot-version=v1.0 ATGGCGGCTACCAATTTCTGCGCCACTTACTCTTCTTCGATCTCGACCACCAACAACAAACAAACGGCACCTCTTCCTGCGTTTCAACCTCGCAGTTGCT CGCCTTCCCTGCCGCACCATCTTCTCTCCGCCAGGCGGAAGCCGGCGACACTCTACGTGACGGCGGCGGCTGCTCCCTCCGCTGTCCAGCAGGTCGACGG AGCCACAAGCTCCGGCAAAGCTTCCAAGGCTCTGCCTTTTAGAGTCGGGCATGGGTTTGACCTTCATCGGCTGGAGCCTGGATACCCTTTGATCATCGGC GGGATTAACATCCCTCACGACCGAGGCTGCGAGGCTCACTCCGACGGAGATGTGTTGCTTCACTGCGTAGTGGATGCGATATTGGGGGCACTGAGTCTGC CTGACATTGGACAGATATTCCCTGATAACGACCCCAAGTGGAAGGGAGCTGCTTCTTCTGTTTTCATCAAAGAAGCTGTGAGACTGATGCATGAAGCTGG CTACGAGATTGGAAACCTAGATGCCACGTTGATTCTTCAAAGGCCGAAACTGAGCCCGTTCAAGGAAGAGATCAGGGCCAATTTGTGTGAGCTACTTGGA GCAGATCCTGCTGTTGTGAACTTGAAGGCAAAAACTCACGAGAAGGTGGATAGTCTGGGCGAGAACAGAAGTCACGAACAAATCCAACAAATACAAATAT ACATCGTCGCCACTCCGAAGAACGTGACCACTGGTTTCACAGTAGATAGGGCATTCACCGTCGTAGAGTCCAAACTGTATGGTACAGGCGGTCGAGTTAA CTATATCGACAAGCCCAATCCCCGGGGCCATCCCAATGGCCCCTTCACACGAGAGGTAGTAGCCACTCTGAATTCGCCAAAGAAAGCACCTCTTGTTGTT CCTTACAAGGATAAGATTTTCTTCATTGCAAATCCTACACGCGATAAGTACTACACTCCTTGTGAGATTTTGCTTCGGTCGGATGGTGATCGGTTTAAAG TTGAGCCTCTTACCACTCCCAAGTTTTGGAAATATGATTCTTATCCTTCTATATGGGAAGAAACTCAACTCAATGCTCATGTAGTTATAAGGAATAAATT TGTTGATCTCAAAGGTGTAGTTGATTCTATGGGGTTGGAAGGATGCTGCTATGTATTCGATGGATGGGTCATTCCCTGTGAAGAGAAACCCAGTAGTGAT GTGTTTTGTCTCATGCTTTACCTCAGCAAGTACTTGGCTGGAAGAAGCAACGATATGAACTACTTCTGCCTTTGCAAGTTCAAATTGGCTGATAACGGGT CCTTCCACGTTTTAACAAGCTGGAGAGTTATTTGTGGTCCATATCAAGAGACGGAACAACACTATTACGGTCTTCATGAAGTAGTGTAA
AA sequence Show only first row Show all	>Lus10028759 pacid=23177244 polypeptide=Lus10028759 locus=Lus10028759.g ID=Lus10028759.BGIv1.0 annot-version=v1.0 MAATNFCATYSSSISTTNNKQTAPLPAFQPRSCSPSLPHHLLSARRKPATLYVTAAAAPSAVQQVDGATSSGKASKALPFRVGHGFDLHRLEPGYPLIIG GINIPHDRGCEAHSDGDVLLHCVVDAILGALSLPDIGQIFPDNDPKWKGAASSVFIKEAVRLMHEAGYEIGNLDATLILQRPKLSPFKEEIRANLCELLG ADPAVVNLKAKTHEKVDSLGENRSHEQIQQIQIYIVATPKNVTTGFTVDRAFTVVESKLYGTGGRVNYIDKPNPRGHPNGPFTREVVATLNSPKKAPLVV PYKDKIFFIANPTRDKYYTPCEILLRSDGDRFKVEPLTTPKFWKYDSYPSIWEETQLNAHVVIRNKFVDLKGVVDSMGLEGCCYVFDGWVIPCEEKPSSD VFCLMLYLSKYLAGRSNDMNYFCLCKFKLADNGSFHVLTSWRVICGPYQETEQHYYGLHEVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10028759 [exp]	0	1
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10023701 [exp]	1.0	0.9931
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013593 [exp]	1.4	0.9920
AT5G56260			Ribonuclease E inhibitor RraA/...		Lus10032885 [exp]	2.0	0.9885
AT1G16120		WAKL1	wall associated kinase-like 1 ...		Lus10008105 [exp]	2.6	0.9877
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10042118 [exp]	2.8	0.9875
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10015049 [exp]	3.2	0.9869
AT4G19880			Glutathione S-transferase fami...		Lus10014304 [exp]	3.5	0.9888
AT2G18620			Terpenoid synthases superfamil...		Lus10009136 [exp]	3.9	0.9885
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10007972 [exp]	4.2	0.9872
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10023259 [exp]	4.9	0.9852

Compare expression of checked genes

Lus10028759 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.