Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11280 570 / 0 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) AT3G61510 555 / 0 AT-ACS1, ACS1 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) AT1G01480 544 / 0 AT-ACC2, ACS2 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) AT4G37770 474 / 1e-165 ACS8 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) AT4G08040 463 / 2e-161 ACS11 1-aminocyclopropane-1-carboxylate synthase 11 (.1) AT3G49700 460 / 4e-160 AtACS9, ACS9, ETO3 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1) AT5G65800 458 / 3e-159 CIN5, ETO2, ACS5, ATACS5 ETHYLENE OVERPRODUCER 2, CYTOKININ-INSENSITIVE 5, ACC synthase 5 (.1) AT4G26200 457 / 5e-159 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT2G22810 454 / 8e-158 ACC4, ACS4, ATACS4 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, 1-aminocyclopropane-1-carboxylate synthase 4 (.1) AT5G51690 336 / 5e-111 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017521 [exp] 827 / 0 AT4G11280 643 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Lus10024673 [exp] 669 / 0 AT1G01480 610 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) Lus10032301 [exp] 666 / 0 AT1G01480 609 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2) Lus10007910 [exp] 566 / 0 AT3G61510 659 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Lus10036396 [exp] 559 / 0 AT3G61510 660 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Lus10011565 [exp] 469 / 3e-163 AT4G37770 740 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10032695 [exp] 456 / 7e-159 AT4G26200 659 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10008579 [exp] 453 / 1e-157 AT4G26200 664 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10039647 [exp] 455 / 2e-157 AT4G37770 739 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G132300 [exp] 644 / 0 AT4G11280 659 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.001G099400 [exp] 639 / 0 AT4G11280 656 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.002G163700 [exp] 564 / 0 AT3G61510 684 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1) Potri.007G007800 [exp] 475 / 5e-166 AT4G37770 749 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.018G067000 [exp] 472 / 4e-165 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.002G113900 [exp] 471 / 1e-164 AT4G37770 682 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.014G012600 [exp] 466 / 3e-162 AT4G37770 755 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.006G149600 [exp] 462 / 3e-161 AT4G26200 651 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.015G132100 [exp] 362 / 1e-120 AT5G51690 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Potri.003G117700 [exp] 346 / 2e-114 AT1G62960 664 / 0.0 ACC synthase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10028760 pacid=23177198 polypeptide=Lus10028760 locus=Lus10028760.g ID=Lus10028760.BGIv1.0 annot-version=v1.0 ATGGTGTTCATGCTGAACAATCAGATGCTTTCAAGGATAGCTACCGGCGACGGCCACGGCGAGATATCCTCCTACTTCGACGGCTGGAAGGCCTACGACA GCGATCCTTACCACCACGTCACCAATCCCAACGGCATGATCCAGATGGGTCTTGCTGAAAACCAGCTCTGCTTCGATATGGTCGAACAATGGATGAACAA CAACCCCTCTGCCTCAATCTGCACCTCCCAGGGAGCCAGAGGGTTCAAAGACATTGCCATCTTCCAGGACTACCATGGCTTACCAGAGTTCCGAAATGCT GTGGCCAAGTTCATGGGGAAAGTTAGAGGAGAGAGAGTGAAATTCAACCCTGACAGGATCGTCATGGCCGGAGGAGCCACCGGCGCTCACGAGACCGTCG CTTTCTGCTTGGCCGATCCCGGCGATGCTTTCCTCATCCCCACTCCTTACTACCCTGGATTCGACCGGGATTTGAGATGGAGGACGGGAGTGCAGCTGGT ACCAATCGAATGCCAGAGCTCCAACAACTTCAAGCTGAGGATTGAAGATTTGGAATCTGCTTACGACATGGCTAAACTCAACAACGTTCGGGTCAAAGGA TTGCTCTTGACCAACCCATCCAACCCGCTGGGTACAATTCTCGACGGGAACACTCTGAGAAGCATTGTCTCCTTCACCAACGACAACAACATTCACCTCA TCTGCGACGAGATCTACTCCGCCACCGTCTTCGACAAGCCTGATTACGTCAGCGTCGCCGAGGTCGTCGACGAATACCTGAACAACGCTAACGACGATGG CGAGGGTGATGATGGTAATAGTAACGGACCCAGGCCCACTCTGAATCTGGACCTGATTCATATAGTGTACAGCCTCTCAAAGGACATGGGCTTCCCGGGT TTCCGGGTCGGGATAATTTACTCATACAACGACGTCGTAGTCAGCTGCGCAAGGAAGATGTCGAGTTTCGGTTTGGTTTCGACCCAGACCCAGCACCTGA TCGGGTCGATGCTCTCTGACGATGAGTTCGTCGACGAATTCATCGCCGCGAACAGACGGAGGCTGGCGGAGAGGCACAGGGCGTTCACGGGGGGTTTGGC GGAGGTGGGAATTCGTTGCCTGAAGACGAGCAACGCCGGGCTGTTTGTGTGGATGGATCTGAGGCGGCTGCTGAAGGAGCAGAGCGTTGAGGCGGAGACG GCGCTGTGGCGCGTGATAATCAACGAGGTGAAGCTCAACGTCTCGCCGGGGAGCTCGTTCCACTGCTCTATTGGAAATGATTTTTCATTTTTCCGCCAAA CTTCACACTCTCCAAGCTTCAAGTGA
AA sequence Show only first row Show all	>Lus10028760 pacid=23177198 polypeptide=Lus10028760 locus=Lus10028760.g ID=Lus10028760.BGIv1.0 annot-version=v1.0 MVFMLNNQMLSRIATGDGHGEISSYFDGWKAYDSDPYHHVTNPNGMIQMGLAENQLCFDMVEQWMNNNPSASICTSQGARGFKDIAIFQDYHGLPEFRNA VAKFMGKVRGERVKFNPDRIVMAGGATGAHETVAFCLADPGDAFLIPTPYYPGFDRDLRWRTGVQLVPIECQSSNNFKLRIEDLESAYDMAKLNNVRVKG LLLTNPSNPLGTILDGNTLRSIVSFTNDNNIHLICDEIYSATVFDKPDYVSVAEVVDEYLNNANDDGEGDDGNSNGPRPTLNLDLIHIVYSLSKDMGFPG FRVGIIYSYNDVVVSCARKMSSFGLVSTQTQHLIGSMLSDDEFVDEFIAANRRRLAERHRAFTGGLAEVGIRCLKTSNAGLFVWMDLRRLLKEQSVEAET ALWRVIINEVKLNVSPGSSFHCSIGNDFSFFRQTSHSPSFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10028760 [exp]	0	1
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10028761 [exp]	1.0	0.8730
AT3G23160			Protein of unknown function (D...		Lus10021210 [exp]	1.4	0.8152
AT5G58320			Kinase interacting (KIP1-like)...		Lus10034448 [exp]	4.9	0.7838
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10017289 [exp]	5.2	0.7538
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10018452 [exp]	5.7	0.7893
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10018549 [exp]	7.0	0.7664
AT4G12010			Disease resistance protein (TI...		Lus10029810 [exp]	7.4	0.6575
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Lus10010053 [exp]	8.5	0.7678
AT2G34930			disease resistance family prot...		Lus10039522 [exp]	11.2	0.7122
AT5G62890			Xanthine/uracil permease famil...		Lus10043460 [exp]	16.0	0.7565

Compare expression of checked genes

Lus10028760 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.