Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01490 74 / 2e-17 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G52740 57 / 2e-11 Copper transport protein family (.1) AT5G23760 51 / 3e-09 Copper transport protein family (.1) AT3G05920 49 / 3e-08 Heavy metal transport/detoxification superfamily protein (.1) AT5G26690 45 / 5e-07 Heavy metal transport/detoxification superfamily protein (.1) AT5G52750 45 / 9e-07 Heavy metal transport/detoxification superfamily protein (.1) AT5G52770 43 / 5e-06 Copper transport protein family (.1) AT1G63950 42 / 1e-05 Heavy metal transport/detoxification superfamily protein (.1) AT5G52730 42 / 2e-05 Copper transport protein family (.1) AT5G27690 40 / 0.0003 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017520 [exp] 175 / 1e-57 AT1G01490 52 / 3e-09 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10014967 [exp] 81 / 7e-20 AT1G01490 100 / 9e-27 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027524 [exp] 82 / 3e-19 AT1G01490 100 / 2e-25 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10039286 [exp] 77 / 2e-17 AT1G01490 97 / 2e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10036395 [exp] 75 / 2e-17 AT1G01490 131 / 1e-38 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10007911 [exp] 74 / 8e-17 AT1G01490 128 / 2e-37 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027523 [exp] 69 / 1e-15 AT1G01490 77 / 3e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10024672 [exp] 68 / 3e-15 AT1G01490 64 / 1e-13 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10007455 [exp] 69 / 3e-14 AT3G44480 98 / 1e-20 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G073000 [exp] 128 / 5e-39 AT1G01490 96 / 5e-26 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.001G099500 [exp] 112 / 5e-33 AT1G01490 105 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G073100 [exp] 99 / 2e-27 AT1G01490 82 / 2e-20 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147500 [exp] 93 / 4e-25 AT1G01490 91 / 4e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147400 [exp] 92 / 6e-25 AT1G01490 74 / 2e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147200 [exp] 90 / 6e-24 AT1G01490 64 / 1e-13 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.003G132200 [exp] 89 / 2e-23 AT1G01490 102 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147000 [exp] 85 / 5e-22 AT1G01490 61 / 2e-12 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.014G089700 [exp] 83 / 1e-20 AT1G01490 115 / 9e-33 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.002G163400 [exp] 77 / 3e-18 AT1G01490 110 / 3e-31 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10028762 pacid=23177214 polypeptide=Lus10028762 locus=Lus10028762.g ID=Lus10028762.BGIv1.0 annot-version=v1.0 ATGAAGAAAGTTGTTATAAAGGTAGATATACAAGACGGCAAGGGCAAGAGGAAGGTGATGAAGGCGGTTGCAGCGCTTTCAAGCATCGATTCGATTACAA TCGACTTGAAGGATCAGAAGCTCACGGTGATCGGAGCTGTGGATCCGATCCACCTCATGTCGAAGCTGAAGAAGTGCTGCACCTCCGAGCTCTTGACCGT GGGACCGGCGCCCAAGGCGGAGGAGAAGAAAGACGACAAGAAGAAAGAGGATCAAGGGAAGAAAGAAGACGAGAAGAAGAAATCAGATCCGGCTATGGAG CAGCGCCATATTCAGGAGCTCGTGAATTCTTACAGATCTTACAATCCCTACATGACTCAGTATTACCATGTGGTCAGCGCTGAAGAAAACCCCAACAGTT GCATCGTTTCCTGA
AA sequence Show only first row Show all	>Lus10028762 pacid=23177214 polypeptide=Lus10028762 locus=Lus10028762.g ID=Lus10028762.BGIv1.0 annot-version=v1.0 MKKVVIKVDIQDGKGKRKVMKAVAALSSIDSITIDLKDQKLTVIGAVDPIHLMSKLKKCCTSELLTVGPAPKAEEKKDDKKKEDQGKKEDEKKKSDPAME QRHIQELVNSYRSYNPYMTQYYHVVSAEENPNSCIVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01490			Heavy metal transport/detoxifi...		Lus10028762 [exp]	0	1
AT1G01490			Heavy metal transport/detoxifi...		Lus10017520 [exp]	3.2	0.9375
AT2G38640			Protein of unknown function (D...		Lus10010681 [exp]	4.5	0.9252
AT5G05340			Peroxidase superfamily protein...		Lus10034207 [exp]	4.5	0.9327
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012145 [exp]	7.8	0.8877
AT5G38200			Class I glutamine amidotransfe...		Lus10028493 [exp]	10.2	0.9310
AT3G51520			diacylglycerol acyltransferase...		Lus10013796 [exp]	11.3	0.8870
AT5G18150			Methyltransferase-related prot...		Lus10020287 [exp]	14.1	0.9158
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	14.3	0.9291
AT4G27290			S-locus lectin protein kinase ...		Lus10038553 [exp]	17.5	0.9142
AT3G15760			unknown protein		Lus10030098 [exp]	19.6	0.9173

Compare expression of checked genes

Lus10028762 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.