Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63940 718 / 0 MDAR6 monodehydroascorbate reductase 6 (.1.2.3.4) AT3G52880 330 / 2e-108 ATMDAR1 monodehydroascorbate reductase 1 (.1.2) AT3G27820 320 / 3e-104 ATMDAR4 monodehydroascorbate reductase 4 (.1) AT5G03630 315 / 7e-103 ATMDAR2 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) AT3G09940 298 / 6e-96 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2) AT3G17240 53 / 3e-07 mtLPD2, LPD2 lipoamide dehydrogenase 2 (.1.2.3) AT1G48030 52 / 1e-06 mtLPD1 mitochondrial lipoamide dehydrogenase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035593 [exp] 341 / 5e-113 AT3G52880 668 / 0.0 monodehydroascorbate reductase 1 (.1.2) Lus10022260 [exp] 326 / 3e-106 AT3G27820 719 / 0.0 monodehydroascorbate reductase 4 (.1) Lus10013079 [exp] 305 / 2e-97 AT3G27820 694 / 0.0 monodehydroascorbate reductase 4 (.1) Lus10008633 [exp] 211 / 3e-63 AT3G52880 493 / 3e-174 monodehydroascorbate reductase 1 (.1.2) Lus10017102 [exp] 49 / 5e-06 AT1G48030 918 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10037825 [exp] 49 / 6e-06 AT1G48030 922 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10043103 [exp] 47 / 3e-05 AT1G48030 889 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2) Lus10032649 [exp] 46 / 6e-05 AT1G48030 892 / 0.0 mitochondrial lipoamide dehydrogenase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G099600 [exp] 746 / 0 AT1G63940 793 / 0.0 monodehydroascorbate reductase 6 (.1.2.3.4) Potri.006G114800 [exp] 348 / 2e-115 AT3G52880 708 / 0.0 monodehydroascorbate reductase 1 (.1.2) Potri.001G346200 [exp] 328 / 2e-107 AT3G27820 723 / 0.0 monodehydroascorbate reductase 4 (.1) Potri.008G100800 [exp] 51 / 2e-06 AT3G17240 868 / 0.0 lipoamide dehydrogenase 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10028763 pacid=23177274 polypeptide=Lus10028763 locus=Lus10028763.g ID=Lus10028763.BGIv1.0 annot-version=v1.0 ATGGCAAGCATCTCCAGTACCTTGTCGTTGAAGCACGGCCTGTCGCTCTGGCCATCGGATTCGGCTGCTCCACTTAGCCGGAAGTCTACTGCGTTGAAAA TCGGATTCCGTAGCTTTAGGAGGAGTTTCGTTGTGGCATCCTCCACCTTCTCCAACGAGAATCGAGAGTTTGTGATAGTAGGCGGAGGGAATGCAGCTGG ATATGCAGCTCGGACTTTCGTTGAACACGGAATGGCCGACGGGAAGCTTTGCATTGTGACAAAAGAGCCACATGCCCCTTACGAGCGTCCTGCTTTAACT AAAGCATATCTGTTTCCACTTGATAAGAAGCCTGCACGGCTGCCAGGGTTCCATACTTGCGTTGGCTCTGGTGGGGAAAGACAAACTCCAGATTGGTACA AAGAGAAAGGCATAGAGATGATATATCAAGATCCAGTTACCAGTGTTGATGTCGAAAAGCAGACGCTCACTACAAATTCAGGCAAGCTGCTCAAGTATGG GGCCCTTATTGTTGCTACAGGATGCACGGCTTCGCGATTTCCTGAGAAAATTGGAGGAAATTTGCCTGGCGTCCACTATATCAGAGATGTGGCGGATGCC GACTCCCTGATATCATCTTTGGAGAAGGCAAAGAAGGTAGTCATTGTTGGCGGTGGTTATATTGGCATGGAAGTCGCTGCAGCTGCTGTTGGTTGGAAAC TTGATACTACGATTGTGTTTCCTGAGGATCACCTGTTGCAAAGGTTGTTCACTCCTCTTGCTCAGAGATATGAACAGTTCTATCAAGAAAATGGCGTCAA GTTTATGAAGGGTGCCTCCATAAAGAACCTAGAAGCAGGTTATGATGGCCGTGTAGCTGCTGTTATGCTAGAAGATGGATCCACTTTGGAAGCTGACGTG GTAGTAATTGGAATCGGTGGAAAGCCAGCTGTAAGTGCCTTCGAAAATGTGGGATTGAACTCTACTGTCGGTGGATTAGAGGTTGATGGCCTGTTCAGGA CAAAGACACCTGGAATATTTGCAATTGGAGACGTTGCAGCATTCCCTTTGAAGATCTACAACCGCACAGCACGAGTTGAACATGTAGATCATGCTCGTCG ATCAGCTCAACATTGTGTGAAATCATTACTTACTGCTCACACTAACACGTACGACTACCTTCCTTACTTTTATTCAAGAGTTTTCGAGTTTGAAGGGAGC CCAAGAAAGATCTGGTGGCAGTTTTTCGGCGACAATGTTGGGGAGACGGTTGAAATTGGAAACTTGGATCCCAAAATTGCAACGTTCTGGATAGATTCTG GTAAACTGAAAGGTGTTCTCCTTGAAAGCGGAAGTCCAGAGGTATATTCTATATTCTTAATAGACCAATTCCAGGACTCCTCCGTTCCTCATTTTGAATT CTGTGCTCAGGAATTCCAGCTCCTTCCTGAACTTGCTAGGAGGCAGCCGAAAATCGACAAATTGAAGCTTGAGAAGGCATCTTCAGTTGAAGAAGCTCTA GAAATTGCCAAGGCTTCCCTGTCTTCAGCTTAG
AA sequence Show only first row Show all	>Lus10028763 pacid=23177274 polypeptide=Lus10028763 locus=Lus10028763.g ID=Lus10028763.BGIv1.0 annot-version=v1.0 MASISSTLSLKHGLSLWPSDSAAPLSRKSTALKIGFRSFRRSFVVASSTFSNENREFVIVGGGNAAGYAARTFVEHGMADGKLCIVTKEPHAPYERPALT KAYLFPLDKKPARLPGFHTCVGSGGERQTPDWYKEKGIEMIYQDPVTSVDVEKQTLTTNSGKLLKYGALIVATGCTASRFPEKIGGNLPGVHYIRDVADA DSLISSLEKAKKVVIVGGGYIGMEVAAAAVGWKLDTTIVFPEDHLLQRLFTPLAQRYEQFYQENGVKFMKGASIKNLEAGYDGRVAAVMLEDGSTLEADV VVIGIGGKPAVSAFENVGLNSTVGGLEVDGLFRTKTPGIFAIGDVAAFPLKIYNRTARVEHVDHARRSAQHCVKSLLTAHTNTYDYLPYFYSRVFEFEGS PRKIWWQFFGDNVGETVEIGNLDPKIATFWIDSGKLKGVLLESGSPEVYSIFLIDQFQDSSVPHFEFCAQEFQLLPELARRQPKIDKLKLEKASSVEEAL EIAKASLSSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63940		MDAR6	monodehydroascorbate reductase...		Lus10028763 [exp]	0	1
AT1G02460			Pectin lyase-like superfamily ...		Lus10038059 [exp]	1.4	0.9649
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10035932 [exp]	3.5	0.9607
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10011430 [exp]	4.7	0.9670
AT3G01516			unknown protein		Lus10014544 [exp]	5.9	0.9577
AT5G62130			Per1-like family protein (.1.2...		Lus10031658 [exp]	7.9	0.9264
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10037572 [exp]	8.5	0.9631
AT3G19990			unknown protein		Lus10028680 [exp]	8.8	0.9637
AT1G80530			Major facilitator superfamily ...		Lus10017480 [exp]	10.2	0.9610
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10043240 [exp]	11.0	0.9528
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10036177 [exp]	12.0	0.9548

Compare expression of checked genes

Lus10028763 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.