Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63930 447 / 3e-156 ROH1 from the Czech 'roh' meaning 'corner' (.1) AT4G11300 318 / 4e-106 Protein of unknown function (DUF793) (.1) AT4G23530 310 / 1e-102 Protein of unknown function (DUF793) (.1) AT1G18740 268 / 8e-87 Protein of unknown function (DUF793) (.1) AT1G74450 257 / 3e-82 Protein of unknown function (DUF793) (.1) AT1G43630 247 / 5e-78 Protein of unknown function (DUF793) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017519 [exp] 334 / 3e-115 AT1G63930 233 / 5e-76 from the Czech 'roh' meaning 'corner' (.1) Lus10029782 [exp] 299 / 2e-98 AT1G18740 477 / 1e-168 Protein of unknown function (DUF793) (.1) Lus10018883 [exp] 291 / 2e-95 AT1G18740 479 / 1e-169 Protein of unknown function (DUF793) (.1) Lus10042809 [exp] 291 / 2e-95 AT1G74450 470 / 7e-166 Protein of unknown function (DUF793) (.1) Lus10028578 [exp] 286 / 1e-93 AT1G18740 488 / 4e-173 Protein of unknown function (DUF793) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G132100 [exp] 509 / 0 AT1G63930 409 / 2e-141 from the Czech 'roh' meaning 'corner' (.1) Potri.001G099700 [exp] 504 / 6e-179 AT1G63930 418 / 5e-145 from the Czech 'roh' meaning 'corner' (.1) Potri.005G192600 [exp] 300 / 4e-99 AT1G18740 461 / 9e-163 Protein of unknown function (DUF793) (.1) Potri.002G067800 [exp] 285 / 5e-93 AT1G18740 463 / 1e-163 Protein of unknown function (DUF793) (.1) Potri.010G171000 [exp] 51 / 6e-07 AT1G01550 69 / 7e-13 BYPASS 1, Protein of unknown function (DUF793) (.1), Protein of unknown function (DUF793) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [flax] [poplar] AT14A-like PF05633 [flax] [poplar] BPS1 Protein BYPASS1-related
Representative CDS sequence Show only first row Show all	>Lus10028764 pacid=23177148 polypeptide=Lus10028764 locus=Lus10028764.g ID=Lus10028764.BGIv1.0 annot-version=v1.0 ATGCCAGCCACAGACTCCCAAGCTTCCTTCCTCGGCCGAATCAGTATCCGTCGCAATCAATCTATCGCCATGGACGGCACACAAGACCAGGATCTCGAAG ACCTCGAGCTCTTCCAGCACAACGTCTCCAACCGATTCACCGACCTCCTCTCCCCTCAGCATAACTCCCCCGACGATAATCACACTCCCGCCGCCGCCGG AGACTCCGGCCTCCTCTCCATTTCATGGCTCCGAAATCTGGTCGACGTTTTCCTCTGCTGCGAGGCGGAATTCAAGGCCGTACTCATCATGGGACGGGAG CCCTCCCATCTAGCCAAGCCCCCTCTCGACCGCCTCATGCCCGAGCTCCTCGACCGCTCCATCAAGGTGCTCGACATATGCAACGCCGTCTCTTCCGGAG TCGAATCCGTCCGGCATTGCCAACGCCTTGCAGAAATCGCCGTCGCCGCGCTGCAACAGACTCCGATCGGCGACGGACAGGTGAAGCGCGCCAGGAAAGC TTTAGGAGCGCTGGTGGCTTCGCTCGAGGACAAAGACCACGGCGGTGTCAGCCACTACAAGACACCGGAGCGGAGCTGGTCGTTCGGCCGGAGCTGGGGC GCCGCGGCGCCGATCAAGGACCGTCCCCCTACGGTACAGTACCGATCGCTGTCGATGGTGATCGGGAAGAACTGGTCCGCCGCGAAGCAGATCCAGGCGA TGTGCTCCAATCTGTACGCGCCACGTGGCGCGGAATTGACGGGGATGGCGTTACCGGTGTACATCATGAACGTGGTGATGGTTTTCGTGATGTGGGCCCT GATCGCGGCCATTCCTTGCCAGGAGCGGGTCGGGTTGCCGCTACATATCCAGATACCGAGGCAGTTTCCGTGGGCCCAGAGCATTATTGGGCTGCAGGAG AAGATTGGGGAAGAATGGAAGAAGAAGGAGAAGAAAGGTTCCGCAGGTTTGCTGGATGAGATGCAGAGGATGGAGAAACTGAGCCAGGGGCTGATTGAGT TCTGCGACGGGTTTCAGTTTCCGGTGGAGGAGGAAGGGAAACTGGAGGAAGTGGCGACGCAGGTAAAGGAGCTGGCGGAAGTGTGCGAGAGGATGGAAGA AGGATTGGTGTCGTTGCAGCAACAGATTAGGGATGTGTTTCATAGGGTGGTGAGGAGTCGGACGGAGGTTCTGGAGTTGTTGGAGCATGCTGGAAGCAAC CCCAACCCATGA
AA sequence Show only first row Show all	>Lus10028764 pacid=23177148 polypeptide=Lus10028764 locus=Lus10028764.g ID=Lus10028764.BGIv1.0 annot-version=v1.0 MPATDSQASFLGRISIRRNQSIAMDGTQDQDLEDLELFQHNVSNRFTDLLSPQHNSPDDNHTPAAAGDSGLLSISWLRNLVDVFLCCEAEFKAVLIMGRE PSHLAKPPLDRLMPELLDRSIKVLDICNAVSSGVESVRHCQRLAEIAVAALQQTPIGDGQVKRARKALGALVASLEDKDHGGVSHYKTPERSWSFGRSWG AAAPIKDRPPTVQYRSLSMVIGKNWSAAKQIQAMCSNLYAPRGAELTGMALPVYIMNVVMVFVMWALIAAIPCQERVGLPLHIQIPRQFPWAQSIIGLQE KIGEEWKKKEKKGSAGLLDEMQRMEKLSQGLIEFCDGFQFPVEEEGKLEEVATQVKELAEVCERMEEGLVSLQQQIRDVFHRVVRSRTEVLELLEHAGSN PNP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63930		ROH1	from the Czech 'roh' meaning '...		Lus10028764 [exp]	0	1
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Lus10041343 [exp]	27.4	0.8619
AT1G78060			Glycosyl hydrolase family prot...		Lus10019099 [exp]	29.2	0.8588
AT4G13710			Pectin lyase-like superfamily ...		Lus10038157 [exp]	30.7	0.7841
AT1G58070			unknown protein		Lus10019953 [exp]	34.1	0.8605
AT5G61350			Protein kinase superfamily pro...		Lus10000562 [exp]	37.9	0.8501
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10007640 [exp]	53.3	0.8333
AT1G05060			unknown protein		Lus10035303 [exp]	54.0	0.8466
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030892 [exp]	58.5	0.8392
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Lus10026471 [exp]	62.6	0.8430
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10029360 [exp]	64.7	0.8033

Compare expression of checked genes

Lus10028764 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.