Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01370 629 / 0 ATMPK4 MAP kinase 4 (.1) AT1G01560 604 / 0 ATMPK11 MAP kinase 11 (.1.2) AT4G11330 599 / 0 ATMPK5 MAP kinase 5 (.1) AT2G46070 591 / 0 MAPK12, ATMPK12 mitogen-activated protein kinase 12 (.1.2) AT1G07880 560 / 0 ATMPK13 Protein kinase superfamily protein (.1.2) AT2G43790 538 / 0 ATMAPK6, MAPK6, ATMPK6 MAP kinase 6 (.1) AT3G45640 520 / 0 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1) AT3G59790 496 / 2e-176 ATMPK10 MAP kinase 10 (.1) AT2G18170 426 / 7e-149 ATMPK7 MAP kinase 7 (.1) AT1G10210 416 / 2e-145 ATMPK1 mitogen-activated protein kinase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017518 [exp] 775 / 0 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10024668 [exp] 674 / 0 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Lus10007921 [exp] 640 / 0 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10036384 [exp] 629 / 0 AT4G01370 681 / 0.0 MAP kinase 4 (.1) Lus10032295 [exp] 580 / 0 AT4G01370 572 / 0.0 MAP kinase 4 (.1) Lus10027091 [exp] 564 / 0 AT2G43790 692 / 0.0 MAP kinase 6 (.1) Lus10008339 [exp] 564 / 0 AT2G43790 691 / 0.0 MAP kinase 6 (.1) Lus10036136 [exp] 521 / 0 AT3G45640 654 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10018127 [exp] 517 / 0 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G131800 [exp] 670 / 0 AT4G01370 656 / 0.0 MAP kinase 4 (.1) Potri.001G099900 [exp] 652 / 0 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Potri.014G088500 [exp] 640 / 0 AT4G01370 676 / 0.0 MAP kinase 4 (.1) Potri.002G162500 [exp] 639 / 0 AT4G01370 684 / 0.0 MAP kinase 4 (.1) Potri.007G139800 [exp] 567 / 0 AT2G43790 684 / 0.0 MAP kinase 6 (.1) Potri.017G010200 [exp] 555 / 0 AT2G43790 677 / 0.0 MAP kinase 6 (.1) Potri.009G066100 [exp] 521 / 0 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.001G271700 [exp] 517 / 0 AT3G45640 640 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.005G231100 [exp] 434 / 6e-152 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.007G020100 [exp] 428 / 5e-150 AT2G18170 654 / 0.0 MAP kinase 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10028765 pacid=23177180 polypeptide=Lus10028765 locus=Lus10028765.g ID=Lus10028765.BGIv1.0 annot-version=v1.0 ATGGTGTCCACCGGAAATACAGACTCCAGCAGCTCCATTTCTGCTCCCAAGGCTCCCAAATTCAAGGGTGTTTCGACCCACGCCGGCCGCTATGTTCAAT ACAATCTCTACGGCAACTATTTTGAAGTCCCCAGCAAGTACGTTCCTCCCATTCGCCCCATCGGCCGTGGCGCTTATGGCATCGTCTGTGCTGCGGTGAA TTCAGACACACACGAGGAAGTGGCTATCAAGAAGATTGGAAATGCATTTGACAACAAAATTGACGCGAAAAGGACATTAAGAGAGATTAAGCTTCTACGC CATATGGACCATGAAAATGTTATTGCTATCAGGGACATTATCCGACCACCGAAGAAAGAGGCATTCAATGATGTGTATATAGTGTATGAATTGATGGATA CTGACCTTCATCAGATCATTCGTTCTGACCAATCGCTGACAGATGATCATTGCCAGTACTTCTTGTATCAATTACTACGTGGATTGAAGTATGTGCACTC GGCCAATGTCCTGCATCGAGATCTTAAACCCAGCAATCTGTTTCTTAATGCAAACTGTGACCTTAAAATTGGAGATTTTGGGCTAGCAAGAACAACTTCT GAGACAGATTTTATGACAGAGTATGTTGTTACTCGTTGGTACCGAGCACCAGAACTGCTCCTAAATTGTTCAGAGTACACTGCTGCTATCGATATTTGGT CTGTTGGTTGCATTCTTGCTGAAATTGTGACAGGAGAACCCCTGTTTCCTGGAACCGATTATGTTCATCAACTGAAGCTTATTACCGAGTTAATAGGCAC ACCGGATGATGCTAGCCTTGGTTTCCTAAGAAGTGACAACGCGAGAAGATACGTTAGAATGCTTCCACAGTTCAGAAAACAAAACTTCTCCATGAGGTTC CTAAATACGTCTCCAGCAGCTGTTGATCTGCTGGAAAAGATGCTTGTATTTGATCCCACCAAACGCATTACAGTTGATGATGCTCTTAGCCATCCATACT TGTCAGCCCTTCACATAATCAACGAAGAACCCATCTGCTCCGCACCTTTCCACTTCGATTTCGAGCAACCGTCATGCACCGAAGAGCATATCAAGGAGCT CATCTGGAAGGAGGCAGTGTGTTTCAATCCAGATCACCAACAGTAG
AA sequence Show only first row Show all	>Lus10028765 pacid=23177180 polypeptide=Lus10028765 locus=Lus10028765.g ID=Lus10028765.BGIv1.0 annot-version=v1.0 MVSTGNTDSSSSISAPKAPKFKGVSTHAGRYVQYNLYGNYFEVPSKYVPPIRPIGRGAYGIVCAAVNSDTHEEVAIKKIGNAFDNKIDAKRTLREIKLLR HMDHENVIAIRDIIRPPKKEAFNDVYIVYELMDTDLHQIIRSDQSLTDDHCQYFLYQLLRGLKYVHSANVLHRDLKPSNLFLNANCDLKIGDFGLARTTS ETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILAEIVTGEPLFPGTDYVHQLKLITELIGTPDDASLGFLRSDNARRYVRMLPQFRKQNFSMRF LNTSPAAVDLLEKMLVFDPTKRITVDDALSHPYLSALHIINEEPICSAPFHFDFEQPSCTEEHIKELIWKEAVCFNPDHQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10028765 [exp]	0	1
AT4G19110			Protein kinase superfamily pro...		Lus10038123 [exp]	34.2	0.7818
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10014992 [exp]	40.1	0.7654
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10014844 [exp]	66.6	0.7345
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10027958 [exp]	87.1	0.7391
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10036141 [exp]	89.9	0.7174
					Lus10009515 [exp]	90.0	0.7472
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10015703 [exp]	91.4	0.7171
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10041179 [exp]	100.8	0.7053
					Lus10022267 [exp]	139.9	0.6971
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Lus10043431 [exp]	194.9	0.6916

Compare expression of checked genes

Lus10028765 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.