Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23500 612 / 0 Pectin lyase-like superfamily protein (.1) AT3G61490 611 / 0 Pectin lyase-like superfamily protein (.1.2.3) AT3G48950 577 / 0 Pectin lyase-like superfamily protein (.1) AT2G23900 543 / 0 Pectin lyase-like superfamily protein (.1) AT3G62110 400 / 5e-136 Pectin lyase-like superfamily protein (.1) AT4G23820 374 / 6e-126 Pectin lyase-like superfamily protein (.1) AT5G41870 348 / 9e-116 Pectin lyase-like superfamily protein (.1) AT4G33440 347 / 9e-115 Pectin lyase-like superfamily protein (.1) AT3G42950 333 / 2e-109 Pectin lyase-like superfamily protein (.1) AT3G16850 321 / 3e-105 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017517 [exp] 857 / 0 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10007922 [exp] 659 / 0 AT3G61490 743 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10027516 [exp] 526 / 0 AT3G48950 629 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10039279 [exp] 524 / 0 AT3G48950 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 395 / 9e-134 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014799 [exp] 367 / 9e-123 AT4G33440 630 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 363 / 3e-121 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003890 [exp] 352 / 3e-117 AT4G23820 657 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023101 [exp] 349 / 6e-116 AT4G23820 642 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G100000 [exp] 702 / 0 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 689 / 0 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.002G162400 [exp] 658 / 0 AT3G61490 734 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.017G145900 [exp] 591 / 0 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.004G073900 [exp] 540 / 0 AT3G48950 635 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 389 / 1e-131 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 388 / 3e-131 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G139100 [exp] 360 / 1e-120 AT4G23820 660 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.005G063400 [exp] 360 / 4e-120 AT4G33440 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G105800 [exp] 359 / 2e-119 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10028766 pacid=23177305 polypeptide=Lus10028766 locus=Lus10028766.g ID=Lus10028766.BGIv1.0 annot-version=v1.0 ATGAAATTTTCTTCCCCAAGTCCAAAACTATTTCAGGTGATGGAAGTTACAGCAGCAGTAGTTTGTGCTGTCCTAGCTCTGGTAATTATGGCAGGGAGTT CTTCGTCAGTTGAAGCCATGAAAAAGTCAATGGAACTGGATTACTTCGAGTTCACAGGGAAAGATTGCAGAGCCAATGTGGCATCCATCACAGATTTTGG AGGAATTGGAGATGGCAACACTTCAAATACAAAGGCTTTCCAGGCTGCAATGGATTCTCTGGCAAATTACTCTTCAGCAGGAGGCTCTTTGCTTTATGTT CCTCCGGGGAGATGGCTCACCGGAAGTTTCAACATCACCGGCAGCCATTTCACTCTCTACCTTGACCAGGATGCCCTTCTTCTTGCCTCTCTGGATGAAG ATCAATACCCTGTGATTGAACCCTTGCCATCTTATGGTAGAGGAAGGGATGCTGATGGTGGAAGGTATAGCAGTCTCATTTTCGGAACCAATCTCACTGA TGTTGTGATTACAGGAGCTAATGGGACTATTGATGGCCAGGGAGAGTTATGGTGGAAGAAATATCGCGCCGGGGAGCTGAATTTTACGAGACCGTACTTG ATAGAACTGATGTATTCTACTGATATACAGATCTCCAATCTTACATTGATGAATTCTCCATCGTGGAATGTTCATCCTGTTTACAGCAGCAATATTCTTG TTAAAGGTTTGACGATTCTGGCACCCGTGACATCTGCAAATACCGATGGGATCAACCCAGATTCATGTACGAATACGAGGATAGAAGACTGCTTCATTGT TTCTGGAGATGACTGTGTAGCTGTGAAGAGTGGTTGGGACGAGTATGGTACTGCATTTGGGATGCCAACCAAGCATCTCGTCATCAAAAGGCTCACCTGC ATTTCCCCCTTCAGCGCCACAATTGCGTTGGGAAGCGAGATGTCAGGCGGGATTCAGGATGTCCGGGCGGAAGACATCACTGCCATAAATACCGAATCAG GTGTCAGGATCAAGACCGCTGTGGGGAGAGGCGGCTATGTGAAGGACATATACGTGAGAAGAATGACGATGAAGACTATGAAATGGGCATTTTGGATGAC AGGGAACTATGGGTCTCACCCTGACAACAACTACGATCCTCAAGCGATACCTATCGTTCAGAACATAAATTACCGCGACATGGTAGCTGAGAATGTGACC ATGGCAGCTAGATTGGAAGGAATCGGAGGGGATCCCTTCACCGGGATCTGCATATCCAATGTAACTATTGGACTCACGGAGAAAGCTAAGAAGCTGCAAT GGAACTGCACAGATGTTGCTGGGATAACGAGTGGCGTAACTCCGAAACCGTGCGATTTGCTACCGGACCAAGGCCAAGAGAAGAAGGCATCTTGCAATTT TCCAGAAGATACCTTGGCAATTGAGGATATCCAAGTTCATTCATGCTCCTACAGTAAGAGATACTTGTGA
AA sequence Show only first row Show all	>Lus10028766 pacid=23177305 polypeptide=Lus10028766 locus=Lus10028766.g ID=Lus10028766.BGIv1.0 annot-version=v1.0 MKFSSPSPKLFQVMEVTAAVVCAVLALVIMAGSSSSVEAMKKSMELDYFEFTGKDCRANVASITDFGGIGDGNTSNTKAFQAAMDSLANYSSAGGSLLYV PPGRWLTGSFNITGSHFTLYLDQDALLLASLDEDQYPVIEPLPSYGRGRDADGGRYSSLIFGTNLTDVVITGANGTIDGQGELWWKKYRAGELNFTRPYL IELMYSTDIQISNLTLMNSPSWNVHPVYSSNILVKGLTILAPVTSANTDGINPDSCTNTRIEDCFIVSGDDCVAVKSGWDEYGTAFGMPTKHLVIKRLTC ISPFSATIALGSEMSGGIQDVRAEDITAINTESGVRIKTAVGRGGYVKDIYVRRMTMKTMKWAFWMTGNYGSHPDNNYDPQAIPIVQNINYRDMVAENVT MAARLEGIGGDPFTGICISNVTIGLTEKAKKLQWNCTDVAGITSGVTPKPCDLLPDQGQEKKASCNFPEDTLAIEDIQVHSCSYSKRYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61490			Pectin lyase-like superfamily ...		Lus10028766 [exp]	0	1
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10040158 [exp]	5.7	0.8651
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10025859 [exp]	17.0	0.8552
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Lus10041352 [exp]	21.6	0.8170
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10022748 [exp]	26.3	0.8243
AT2G42005			Transmembrane amino acid trans...		Lus10026549 [exp]	26.9	0.8507
AT1G27100			Actin cross-linking protein (....		Lus10037230 [exp]	28.2	0.8353
AT4G22758			unknown protein		Lus10006995 [exp]	28.6	0.8464
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10041653 [exp]	41.6	0.8363
AT5G63130			Octicosapeptide/Phox/Bem1p fam...		Lus10017947 [exp]	49.7	0.8274
AT3G55420			unknown protein		Lus10040295 [exp]	56.6	0.8003

Compare expression of checked genes

Lus10028766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.