Plant FIBer expression Database

Lus10028768 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G41460 64 / 5e-13 Protein of unknown function (DUF604) (.1)
AT4G23490 54 / 2e-09 Protein of unknown function (DUF604) (.1)
AT4G11350 48 / 2e-07 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017514
[exp]
180 / 2e-55 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1)
Lus10024663
[exp]
81 / 2e-19 AT5G41460 280 / 2e-94 Protein of unknown function (DUF604) (.1)
Lus10032293
[exp]
80 / 1e-18 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G100700
[exp]
97 / 9e-25 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1)
Potri.003G131400
[exp]
94 / 2e-23 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1)
PFAM info
Representative CDS sequence
>Lus10028768 pacid=23177158 polypeptide=Lus10028768 locus=Lus10028768.g ID=Lus10028768.BGIv1.0 annot-version=v1.0
ATGAAAGGGAGCCAGAAAGATCCGGAGAAGATCATCTGGGATCAGATGCGGAGCCCTTCACACCCCAATTCCATCTCCGGTCCGGGTTCCCAAGCTCGGC
TCCTCCCCAAGCTCATGGCCTCCCTCTTGCTCTTCGTCACCATCACCTACGTTTTCTACACTTTGAAGCTCGTCTCCACTTCCTGCAACCACGAGCCCTT
CTCCTCCTCCACCCGCCACCTCTCCCTCGCCACCAACAACCACTCCGACATCGCTACTACGGAAGTCTCTCTCTCCCGCCTCTCTCGCCCGCCGCCGCGA
GATAGAGGAGACGTCGTCGTCGACGACGACAACGTCATCTTCTAA
AA sequence
>Lus10028768 pacid=23177158 polypeptide=Lus10028768 locus=Lus10028768.g ID=Lus10028768.BGIv1.0 annot-version=v1.0
MKGSQKDPEKIIWDQMRSPSHPNSISGPGSQARLLPKLMASLLLFVTITYVFYTLKLVSTSCNHEPFSSSTRHLSLATNNHSDIATTEVSLSRLSRPPPR
DRGDVVVDDDNVIF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G41460 Protein of unknown function (D... Lus10028768
[exp]
0 1
AT4G23490 Protein of unknown function (D... Lus10028769
[exp]
1.0 0.9358
AT2G02955 MEE12 maternal effect embryo arrest ... Lus10030476
[exp]
2.8 0.8646
AT5G46290 KAS1, KAS I, KA... KETOACYL-ACP SYNTHASE 1, 3-ket... Lus10004934
[exp]
4.6 0.8798
AT3G16290 EMB2083 embryo defective 2083, AAA-typ... Lus10037574
[exp]
5.7 0.8733
AT5G40250 RING/U-box superfamily protein... Lus10023205
[exp]
6.9 0.8450
AT2G44640 unknown protein Lus10043347
[exp]
8.8 0.8827
AT1G68560 AXY3, TRG1, XYL... thermoinhibition resistant ger... Lus10034315
[exp]
10.1 0.8694
AT3G51740 IMK2 inflorescence meristem recepto... Lus10002854
[exp]
13.2 0.8704
AT5G62170 unknown protein Lus10027403
[exp]
13.5 0.8443
AT1G78270 ATUGT85A4 UDP-glucosyl transferase 85A4 ... Lus10036969
[exp]
13.9 0.8127

Lus10028768 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.