Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23490 369 / 2e-127 Protein of unknown function (DUF604) (.1) AT4G11350 360 / 8e-124 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT5G41460 355 / 7e-122 Protein of unknown function (DUF604) (.1) AT1G07850 274 / 5e-90 Protein of unknown function (DUF604) (.1) AT1G01570 262 / 6e-86 Protein of unknown function (DUF604) (.1) AT4G00300 206 / 6e-62 fringe-related protein (.1.2) AT2G37730 164 / 5e-48 Protein of unknown function (DUF604) (.1) AT3G11420 147 / 9e-42 Protein of unknown function (DUF604) (.1) AT4G15240 138 / 2e-38 Protein of unknown function (DUF604) (.1) AT1G05280 126 / 4e-34 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017514 [exp] 449 / 1e-158 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10024662 [exp] 412 / 5e-148 AT4G23490 441 / 5e-155 Protein of unknown function (DUF604) (.1) Lus10032293 [exp] 409 / 5e-143 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 292 / 4e-97 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 280 / 3e-92 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10007923 [exp] 263 / 6e-87 AT4G11350 397 / 5e-135 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10036142 [exp] 218 / 2e-71 AT1G07850 234 / 5e-74 Protein of unknown function (DUF604) (.1) Lus10027152 [exp] 140 / 3e-39 AT4G15240 521 / 0.0 Protein of unknown function (DUF604) (.1) Lus10027153 [exp] 139 / 1e-38 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G100700 [exp] 389 / 4e-135 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 387 / 2e-134 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 294 / 3e-98 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 271 / 3e-89 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.017G039500 [exp] 152 / 2e-43 AT4G15240 491 / 9e-171 Protein of unknown function (DUF604) (.1) Potri.008G058900 [exp] 149 / 3e-42 AT3G11420 493 / 1e-171 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 146 / 3e-41 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 144 / 2e-40 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 143 / 3e-40 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1) Potri.011G147300 [exp] 135 / 3e-37 AT1G33250 648 / 0.0 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF04646 [flax] [poplar] DUF604 Protein of unknown function, DUF604
Representative CDS sequence Show only first row Show all	>Lus10028769 pacid=23177098 polypeptide=Lus10028769 locus=Lus10028769.g ID=Lus10028769.BGIv1.0 annot-version=v1.0 ATGCAGTATGATGTGTACGGGAATCTCTTTGGACTACTAGCATCACACCCGGTAACTCCATTAGTATCGCTGCATCACCTCGACGTGGTCGAGCCGATCT TCCCCAACGTAACCCGAGTCGAGGCGCTTCAGAGGCTAACCGTGCCGATGAAGATGGACTCGGCAGGGATAATGCAGCAATCCATCTGCTACGACAAGTC CAGAAGCTGGACAGTGTCGGTCTCGTGGGGGTTTGCCGTACAGATCTTCCGGGGAGTGTCCTCGCCTCGTGAGATAGAGATGCCGTCGAGAACGTTCTTA AACTGGTACAGAAGAGCCGACTACACTGCGTACGCGTTCAACACTCGCCCTGTTAGCCGGAACCCTTGCCAAAAGCCGTTTGTGTTTTACATGTCGAAGA CGAGGTTCGTGAAATCGTTGAACACTACGGTGAGCGAGTACGAAAAGCATCGGGTTCCTCACCCGGAATGCCGGTGGAAGATGGCCGATCCGTCCAATAT TACTATGGCGATTGTGTACAAACGGCCGGACCCTCATCTGTGGAACAGGTCTCCGAGAAGGAACTGTTGCAGGGTGATGAGCATAAAGAAGAAAGGAACC ATTACGATCGATGTAGGCGAATGTAGAGATGGTGAAGTCAGTGAAGTATAA
AA sequence Show only first row Show all	>Lus10028769 pacid=23177098 polypeptide=Lus10028769 locus=Lus10028769.g ID=Lus10028769.BGIv1.0 annot-version=v1.0 MQYDVYGNLFGLLASHPVTPLVSLHHLDVVEPIFPNVTRVEALQRLTVPMKMDSAGIMQQSICYDKSRSWTVSVSWGFAVQIFRGVSSPREIEMPSRTFL NWYRRADYTAYAFNTRPVSRNPCQKPFVFYMSKTRFVKSLNTTVSEYEKHRVPHPECRWKMADPSNITMAIVYKRPDPHLWNRSPRRNCCRVMSIKKKGT ITIDVGECRDGEVSEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23490			Protein of unknown function (D...		Lus10028769 [exp]	0	1
AT5G41460			Protein of unknown function (D...		Lus10028768 [exp]	1.0	0.9358
AT5G41460			Protein of unknown function (D...		Lus10017514 [exp]	1.4	0.9165
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Lus10036969 [exp]	4.5	0.8626
AT2G26900		BASS2	bile acid:sodium symporter fam...		Lus10036583 [exp]	6.0	0.8611
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Lus10023741 [exp]	6.0	0.8838
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10039705 [exp]	7.1	0.8814
AT1G06190			Rho termination factor (.1.2)		Lus10024898 [exp]	7.5	0.9003
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10041370 [exp]	8.2	0.8434
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10029284 [exp]	9.6	0.8314
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10030476 [exp]	10.5	0.8231

Compare expression of checked genes

Lus10028769 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.