Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41410 263 / 1e-79 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1) AT4G36870 263 / 2e-78 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT2G23760 251 / 1e-74 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT2G16400 212 / 8e-62 HD BLH7 BEL1-like homeodomain 7 (.1) AT4G34610 203 / 7e-58 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT2G35940 206 / 1e-57 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT1G19700 202 / 1e-57 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT1G75410 196 / 2e-55 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT2G27220 165 / 6e-45 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT1G75430 154 / 2e-42 HD BLH11 BEL1-like homeodomain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017513 [exp] 625 / 0 AT5G41410 340 / 1e-108 BELL 1, POX (plant homeobox) family protein (.1) Lus10032292 [exp] 353 / 5e-115 AT5G41410 309 / 6e-98 BELL 1, POX (plant homeobox) family protein (.1) Lus10016790 [exp] 228 / 4e-68 AT4G36870 371 / 2e-121 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10022485 [exp] 233 / 3e-67 AT4G36870 398 / 5e-128 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Lus10004201 [exp] 230 / 1e-66 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10029405 [exp] 227 / 2e-65 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10013579 [exp] 206 / 7e-59 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10000184 [exp] 207 / 2e-58 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10028802 [exp] 207 / 5e-58 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G100800 [exp] 427 / 5e-142 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1) Potri.003G131300 [exp] 422 / 7e-140 AT5G41410 434 / 2e-144 BELL 1, POX (plant homeobox) family protein (.1) Potri.007G032700 [exp] 271 / 2e-80 AT4G36870 475 / 7e-157 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.005G129500 [exp] 258 / 9e-76 AT4G36870 449 / 1e-146 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) Potri.004G159300 [exp] 229 / 3e-66 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.009G120800 [exp] 227 / 1e-65 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.016G069700 [exp] 227 / 2e-65 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.006G203000 [exp] 222 / 1e-63 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.002G031000 [exp] 210 / 2e-59 AT2G16400 345 / 8e-112 BEL1-like homeodomain 7 (.1) Potri.001G216600 [exp] 202 / 5e-56 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07526 [flax] [poplar] POX Associated with HOX
Representative CDS sequence Show only first row Show all	>Lus10028770 pacid=23177251 polypeptide=Lus10028770 locus=Lus10028770.g ID=Lus10028770.BGIv1.0 annot-version=v1.0 ATGATCCACCCCCACCACCACCATAATCAGATCCACAACGGAAGCTTCCAATCAACAGCGCCGCCGCCTTCCTCCGATGATGTGTTGAACGAAGAAATGA TACCTCACTCCTCCTCCATCTGGAAACCCTTCTTCCCCAAAGACGGCAGCAGCGGAGGAACCGGATCCCCAAAGTCCACCCCGGCCGGAGACGATAATGA TCAGTTTTACCAGTTCAACCCGGCGGCCGGGATTAGCAACTCCGATAACAGCACGACAAGGATGATGATGATGATGACGACAGTGGATAAAGATCCGAAT CATAATTCGCCGCCTCCGCCGAGTAGCAGCCAAGGACTCTCACTTTCTCTCTCCTCCCTCCAACAACAGCAGCAGCAGATGGCGGCCGCGATGTTACAAA CCGCCGGCGGGAATATTAATCCGAGTCTGTACGAGTTCGAATTGAGAAGGTCAAGGTATCTGGTAGCGGCGCAGGAACTTTTAAACGAATTCTGCAGCCT TGGTAGTAGTACAAAACAAACCGATTCCAAACAGCCCCTAAAATCCAAACCCTTGGATGTCGACGTCGACGACGACGATGATACTTCTTCCTCCTCCTCC AGGATTAAGCCGTCTCCTGGTTCCCTTGAATTCCTCGAGTTCCAGAAGCGCAAGACTAAGCTCTACTCTCTTCTCGAAGAGGTGGATATGAAGTATCGGC ACTACTGCGAGCAAATGAAGGCGGTAGTGTCGTCGTTCCAGTCGGTGGCAGGGGTCGGGACTGCTGCGGTATACTCGGCATTGGCGTCAAAGGCAATGTC GAGGCACTTCAGGTGTCTGCGAGACGGAATCGTGGCGCAAATCCAGGCTACGAGGAAGGCGATGGGGGAGAAAGATCCGGTGGCTCCGGGGACGACGAGA GGGGAAACGCCGAGGTTGAAGGTGATTGACCAGACGATAAGGCAGCACAAGGCGTTCCAGCAGATGAACATGATGGAGAGTCACCCTTGGCGCCCCCAGC GTGGCCTCCCTGAGAGATCCGTCTCCGTCCTCCGCGCCTGGCTCTTCGAGCATTTCCTCCACCCGTATCCGAGTGATGTTGATAAACATATATTAGCACG CCAAACAGTGAGGCTATGGAAGCCAATGGTGGAACAACTGTATGTTGAAGAATCAAAAGACCATGAAGACCTTCTTTTCAACAACAACAACAATAATCTC ATGTTGGCTTCCTCGGATGGCGAAGTAGCTACTACTACCTTTGATGGCCACAATCTTCAAGACGACGACAATAACAATATCAACATACGTCTGCTTAGTA GTAGTAGTACAAGTAATTACCTTTCGTCCTCGGATCAAAATCCAACACAAGACCAGCTCATCCGAATGGAACCCGATTGCCTCTCATCCATCATCTCCAA CTCTGATCATCGTAAAGCCTTCCAAAACCACCACCAAGAACAACAACAACGACAACATATCGGGTTCGGAGCATTTGGGAAAGTGGAGCTTGGCCATTTC TCGTCATACAATCACCGAAGTTCTACATCTACATCTCACTTCCATCATCAACAGCCATTAGGAGGGGGGGTGTCATTAACCCTAGGGTTGCAACAGCACG GTGGTGATGGAGGTGGAGGAGTAAGCTTGGCGTTCACTCCAGTAGCATCACAAAGTAGTAGTAATCTTTTCTTCCCTAGAGACCACAATATCGAACAACA AGAACAGGTTCATCATCATCATCATCATCAATACTCACTACTTGATGGAGATCATGATCAAGGACAAAACTTGCCTTACAGGAACTTGATGGGTGCTCAG CTGCTACATGACTTCGCCGGATGA
AA sequence Show only first row Show all	>Lus10028770 pacid=23177251 polypeptide=Lus10028770 locus=Lus10028770.g ID=Lus10028770.BGIv1.0 annot-version=v1.0 MIHPHHHHNQIHNGSFQSTAPPPSSDDVLNEEMIPHSSSIWKPFFPKDGSSGGTGSPKSTPAGDDNDQFYQFNPAAGISNSDNSTTRMMMMMTTVDKDPN HNSPPPPSSSQGLSLSLSSLQQQQQQMAAAMLQTAGGNINPSLYEFELRRSRYLVAAQELLNEFCSLGSSTKQTDSKQPLKSKPLDVDVDDDDDTSSSSS RIKPSPGSLEFLEFQKRKTKLYSLLEEVDMKYRHYCEQMKAVVSSFQSVAGVGTAAVYSALASKAMSRHFRCLRDGIVAQIQATRKAMGEKDPVAPGTTR GETPRLKVIDQTIRQHKAFQQMNMMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTVRLWKPMVEQLYVEESKDHEDLLFNNNNNNL MLASSDGEVATTTFDGHNLQDDDNNNINIRLLSSSSTSNYLSSSDQNPTQDQLIRMEPDCLSSIISNSDHRKAFQNHHQEQQQRQHIGFGAFGKVELGHF SSYNHRSSTSTSHFHHQQPLGGGVSLTLGLQQHGGDGGGGVSLAFTPVASQSSSNLFFPRDHNIEQQEQVHHHHHHQYSLLDGDHDQGQNLPYRNLMGAQ LLHDFAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10028770 [exp]	0	1
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10016685 [exp]	9.4	0.8787
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10002174 [exp]	10.3	0.8776
AT3G24760			Galactose oxidase/kelch repeat...		Lus10025938 [exp]	12.5	0.8305
AT4G29990			Leucine-rich repeat transmembr...		Lus10025849 [exp]	17.9	0.8585
AT1G54730			Major facilitator superfamily ...		Lus10033815 [exp]	18.5	0.8580
AT1G32220			NAD(P)-binding Rossmann-fold s...		Lus10012126 [exp]	20.1	0.8565
AT3G18060			transducin family protein / WD...		Lus10032444 [exp]	20.5	0.8490
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10016521 [exp]	23.9	0.8012
AT4G27250			NAD(P)-binding Rossmann-fold s...		Lus10021294 [exp]	27.2	0.7558
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10024195 [exp]	29.7	0.8243

Compare expression of checked genes

Lus10028770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.